miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 33263 0.67 0.616794
Target:  5'- -cGCugCCCcgcuccggguggGGGGUGGCccggcugGGCACCg -3'
miRNA:   3'- guCGugGGG------------CCCCACUGca-----CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 33363 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 33385 0.67 0.616794
Target:  5'- -cGCugCCCcgcuccggguggGGGGUGGCccgccugGGCACCg -3'
miRNA:   3'- guCGugGGG------------CCCCACUGca-----CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 33456 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 33549 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 33642 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 33693 0.71 0.383276
Target:  5'- cCGGCuuccuCCCCGGGGUGuGCccGGCcuACCCc -3'
miRNA:   3'- -GUCGu----GGGGCCCCAC-UGcaCCG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 33735 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 33828 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 33880 0.7 0.440817
Target:  5'- cCGGCcuccuCCCCGGGGUGuGCccGGCcuACCCc -3'
miRNA:   3'- -GUCGu----GGGGCCCCAC-UGcaCCG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 33921 0.68 0.568607
Target:  5'- cCGGcCACCCCcgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG---------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 34013 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 34106 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 34153 0.66 0.703588
Target:  5'- cCGGaGCCCCGgcgaGGGUGGgGgGuGCGCCCc -3'
miRNA:   3'- -GUCgUGGGGC----CCCACUgCaC-CGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 34199 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 34292 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 34385 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 34478 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 34571 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 34664 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.