miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 48626 0.68 0.559068
Target:  5'- gGGUGCCgUGGGGgcgggcuccgGGCG-GGUGCCCa -3'
miRNA:   3'- gUCGUGGgGCCCCa---------CUGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 49487 0.68 0.549574
Target:  5'- gCGGUgucgGCCa-GGGGcGGCGUGGCAUCUg -3'
miRNA:   3'- -GUCG----UGGggCCCCaCUGCACCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 50205 0.67 0.645879
Target:  5'- gGGUagGCCCgGgGGGUGA-GUGGUcaACCCc -3'
miRNA:   3'- gUCG--UGGGgC-CCCACUgCACCG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 50226 0.71 0.383276
Target:  5'- -uGCACCCgCGagauGGUGGCgGUGGCugCCu -3'
miRNA:   3'- guCGUGGG-GCc---CCACUG-CACCGugGG- -5'
29115 3' -62.2 NC_006146.1 + 51213 0.7 0.456391
Target:  5'- gGGCAUCcacgaggCCGGGGUGGCG-GGUgagguuggugaugGCCCu -3'
miRNA:   3'- gUCGUGG-------GGCCCCACUGCaCCG-------------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 51740 0.68 0.568607
Target:  5'- gCGGCGCCCCGaGGUGggcuucuuguGCG-GGCugUCc -3'
miRNA:   3'- -GUCGUGGGGCcCCAC----------UGCaCCGugGG- -5'
29115 3' -62.2 NC_006146.1 + 51824 0.69 0.502954
Target:  5'- -cGUuCCCCGGGGcGGCGUGGagggggGCUCg -3'
miRNA:   3'- guCGuGGGGCCCCaCUGCACCg-----UGGG- -5'
29115 3' -62.2 NC_006146.1 + 52919 0.68 0.587802
Target:  5'- uGGCcCCCCGGGG--GCGcUGGC-CUCg -3'
miRNA:   3'- gUCGuGGGGCCCCacUGC-ACCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 53341 0.68 0.530742
Target:  5'- cCGGCGgCCgCGGGGcGGCGUgaggucuuGGCugGCCCg -3'
miRNA:   3'- -GUCGUgGG-GCCCCaCUGCA--------CCG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 53597 0.68 0.568607
Target:  5'- aGGgAUgCCGGGGaaagGGCGcGGCACCg -3'
miRNA:   3'- gUCgUGgGGCCCCa---CUGCaCCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 55055 0.69 0.519555
Target:  5'- --uCACCCCGGGGUGGCcaugacgGUGGUcaggacggacgagAUCCu -3'
miRNA:   3'- gucGUGGGGCCCCACUG-------CACCG-------------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 56380 0.68 0.530742
Target:  5'- gAGCACCgCCGccGGGUaaGCGUGGcCGCUCg -3'
miRNA:   3'- gUCGUGG-GGC--CCCAc-UGCACC-GUGGG- -5'
29115 3' -62.2 NC_006146.1 + 57344 0.68 0.586839
Target:  5'- gCGGgGCCCCGGgugucGGUGAgGgaggcugcggcggUGGCGCCg -3'
miRNA:   3'- -GUCgUGGGGCC-----CCACUgC-------------ACCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 57760 0.72 0.370841
Target:  5'- aCGGauaGCCUCGGGG-GGCGUGGgagauuugaggcagcCGCCCu -3'
miRNA:   3'- -GUCg--UGGGGCCCCaCUGCACC---------------GUGGG- -5'
29115 3' -62.2 NC_006146.1 + 58223 0.66 0.684488
Target:  5'- gUAGCGCacaCCGGGGgcgugGACaagGGCuauaaaagggGCCCg -3'
miRNA:   3'- -GUCGUGg--GGCCCCa----CUGca-CCG----------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 58965 0.68 0.549574
Target:  5'- gCAGC-CCUCGaGGGaGACgGUGGcCACCUg -3'
miRNA:   3'- -GUCGuGGGGC-CCCaCUG-CACC-GUGGG- -5'
29115 3' -62.2 NC_006146.1 + 60659 0.68 0.53449
Target:  5'- -uGCACCCUcaucgagacccacgaGGGG-GugGUGuGUGCCCu -3'
miRNA:   3'- guCGUGGGG---------------CCCCaCugCAC-CGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 62995 0.67 0.626487
Target:  5'- uGGCccuggGCUCCGGGaGUcuGGCG-GGUGCCCg -3'
miRNA:   3'- gUCG-----UGGGGCCC-CA--CUGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 63645 0.75 0.242601
Target:  5'- gGGCACCCgGGGGUGAUGaacuaggugGGCuuuCCUg -3'
miRNA:   3'- gUCGUGGGgCCCCACUGCa--------CCGu--GGG- -5'
29115 3' -62.2 NC_006146.1 + 64236 0.68 0.578187
Target:  5'- -uGCGCCugggCCGGGGcgggaggGGCGUGGCucGCuCCg -3'
miRNA:   3'- guCGUGG----GGCCCCa------CUGCACCG--UG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.