miRNA display CGI


Results 81 - 100 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 68732 0.67 0.645879
Target:  5'- gAGCugUCgCGGGGUG--GUGGagGCCCa -3'
miRNA:   3'- gUCGugGG-GCCCCACugCACCg-UGGG- -5'
29115 3' -62.2 NC_006146.1 + 71005 0.66 0.694061
Target:  5'- -uGCGCCCgGGGGgca-GaGGCGCCg -3'
miRNA:   3'- guCGUGGGgCCCCacugCaCCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 74845 0.66 0.666197
Target:  5'- -uGCAgCCCuGGGUGAUGggcuucuugacggccGGCACCa -3'
miRNA:   3'- guCGUgGGGcCCCACUGCa--------------CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 75707 0.73 0.290432
Target:  5'- gCAGacCACCCCGGGGUgaggacacugaGACGUGGUuagaacguaACCUg -3'
miRNA:   3'- -GUC--GUGGGGCCCCA-----------CUGCACCG---------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 76099 0.7 0.45814
Target:  5'- gGGCAacCCCCGGGccucggccuacGUgGACGUGGCccgcaacuggGCCCu -3'
miRNA:   3'- gUCGU--GGGGCCC-----------CA-CUGCACCG----------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 76385 0.73 0.30349
Target:  5'- gGGCGCgCCGGGGgaggGACcgggGGCGCCg -3'
miRNA:   3'- gUCGUGgGGCCCCa---CUGca--CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 80090 0.68 0.559068
Target:  5'- aCAGCGCCU--GGGUGGCGacacugGGUGCUCa -3'
miRNA:   3'- -GUCGUGGGgcCCCACUGCa-----CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 90046 0.71 0.375472
Target:  5'- uGGCACCgCGGGGUGcguuaugcACGUGG-GCCa -3'
miRNA:   3'- gUCGUGGgGCCCCAC--------UGCACCgUGGg -5'
29115 3' -62.2 NC_006146.1 + 91772 0.73 0.296905
Target:  5'- gGGUG-CCUGGGGUGcCGUgcuGGCACCCg -3'
miRNA:   3'- gUCGUgGGGCCCCACuGCA---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 96154 0.66 0.703588
Target:  5'- uGGCcCCCCGGaGGcUGGCucacUGGguCCCu -3'
miRNA:   3'- gUCGuGGGGCC-CC-ACUGc---ACCguGGG- -5'
29115 3' -62.2 NC_006146.1 + 100708 0.7 0.449432
Target:  5'- cCGGCGCUgCGGGGgugGGUGUGGgACCg -3'
miRNA:   3'- -GUCGUGGgGCCCCa--CUGCACCgUGGg -5'
29115 3' -62.2 NC_006146.1 + 100750 0.68 0.56002
Target:  5'- cCAGCGCCCCGGccaggagccaGGcGAaggcggcaaagaucaGUGGCACgCCu -3'
miRNA:   3'- -GUCGUGGGGCC----------CCaCUg--------------CACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 101284 0.77 0.174787
Target:  5'- cCAGUACCCCGGGG--ACGUGG-GCCUg -3'
miRNA:   3'- -GUCGUGGGGCCCCacUGCACCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 102760 0.69 0.475819
Target:  5'- aGGCAgCCCCuuuccuGcGUGGCGUGGCGCCg -3'
miRNA:   3'- gUCGU-GGGGcc----C-CACUGCACCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 102896 0.67 0.636184
Target:  5'- gGGgACgCCaGGGGccgugUGGCGUGGCugcGCCCc -3'
miRNA:   3'- gUCgUGgGG-CCCC-----ACUGCACCG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 109339 0.68 0.54013
Target:  5'- uCAGCgugGCCCuCGGGGUGgggaauagacaGCGagGGCGuCCCc -3'
miRNA:   3'- -GUCG---UGGG-GCCCCAC-----------UGCa-CCGU-GGG- -5'
29115 3' -62.2 NC_006146.1 + 113640 0.66 0.681608
Target:  5'- aCGGUGCUCCGGGG-GA--UGGCcuugcugaccacggGCCCg -3'
miRNA:   3'- -GUCGUGGGGCCCCaCUgcACCG--------------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 114243 0.69 0.493831
Target:  5'- cCGGCACCUCaGGGagGGCcagcucguaGUGGUGCCCc -3'
miRNA:   3'- -GUCGUGGGGcCCCa-CUG---------CACCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 114327 0.68 0.587802
Target:  5'- uCGGCGCCCggccgccccugaCGGaGGUgGACGggGGCcugGCCCg -3'
miRNA:   3'- -GUCGUGGG------------GCC-CCA-CUGCa-CCG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 115057 0.68 0.529806
Target:  5'- -uGCACCUCGGuguugcuGGUGGcCG-GGUGCCCa -3'
miRNA:   3'- guCGUGGGGCC-------CCACU-GCaCCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.