miRNA display CGI


Results 101 - 120 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 115331 0.67 0.595514
Target:  5'- aCGGCACCCCGGacucggucaucgaGGccuuccuggccGGCGUGGCggcggagcuggagGCCCu -3'
miRNA:   3'- -GUCGUGGGGCC-------------CCa----------CUGCACCG-------------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 115528 0.7 0.428915
Target:  5'- uCGGUGCCCCGGgcgucccgcgcgcGGUGGCGggGGCuggaggcgaccgcgGCCCu -3'
miRNA:   3'- -GUCGUGGGGCC-------------CCACUGCa-CCG--------------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 115855 0.69 0.493831
Target:  5'- uGGcCACCCCGGGGUGAaucuUGaGCuugGCCUg -3'
miRNA:   3'- gUC-GUGGGGCCCCACUgc--AC-CG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 117421 0.69 0.512149
Target:  5'- -cGCACCCCcGGcccugaccGACGaGGCACCCg -3'
miRNA:   3'- guCGUGGGGcCCca------CUGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 118052 0.67 0.597445
Target:  5'- gAGC-CCCCGGGcGggGGCGgcggcGGCucgGCCCu -3'
miRNA:   3'- gUCGuGGGGCCC-Ca-CUGCa----CCG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 119087 0.73 0.28407
Target:  5'- -cGcCGCCCCGGGGaacgggUGGCuUGGCGCCUc -3'
miRNA:   3'- guC-GUGGGGCCCC------ACUGcACCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 122854 0.66 0.703588
Target:  5'- -cGCugCCCGGGGcgcugGACGacccGaGCcgGCCCg -3'
miRNA:   3'- guCGugGGGCCCCa----CUGCa---C-CG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 123715 0.66 0.665231
Target:  5'- uGGCG-CUCGGGGcGGCGgcgGGCucuCCCc -3'
miRNA:   3'- gUCGUgGGGCCCCaCUGCa--CCGu--GGG- -5'
29115 3' -62.2 NC_006146.1 + 128190 0.68 0.54013
Target:  5'- aGGCGgCCCaGGGG-GGCGccgcGGCGCCg -3'
miRNA:   3'- gUCGUgGGG-CCCCaCUGCa---CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 128508 0.7 0.423873
Target:  5'- aCGGCG--UCGGGGUGGCccuggGGCGCCCc -3'
miRNA:   3'- -GUCGUggGGCCCCACUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 129914 0.76 0.18773
Target:  5'- -uGCGCCCUGGGGcgccGGCGcGGCACCa -3'
miRNA:   3'- guCGUGGGGCCCCa---CUGCaCCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 129951 0.67 0.645879
Target:  5'- aCGGCACggaCCUGGGGUGGguccUGaGGCACUUu -3'
miRNA:   3'- -GUCGUG---GGGCCCCACU----GCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 130222 0.66 0.665231
Target:  5'- aAGCACCUCaGGGUG--GUGGCcagGCCg -3'
miRNA:   3'- gUCGUGGGGcCCCACugCACCG---UGGg -5'
29115 3' -62.2 NC_006146.1 + 137023 0.66 0.694061
Target:  5'- gGGCacACCCCGGGGagGAggcCGggugGGgGCCUg -3'
miRNA:   3'- gUCG--UGGGGCCCCa-CU---GCa---CCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 137210 0.66 0.694061
Target:  5'- gGGCacACCCCGGGGagGAagcCGggugGGgGCCUg -3'
miRNA:   3'- gUCG--UGGGGCCCCa-CU---GCa---CCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 137708 0.72 0.345346
Target:  5'- cCGGCcuccCCCCGGGGUGccCG-GGCcuACCCg -3'
miRNA:   3'- -GUCGu---GGGGCCCCACu-GCaCCG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 137986 0.69 0.484785
Target:  5'- gGGgGCCCggCGGGGUGGgGgGuGCGCCCc -3'
miRNA:   3'- gUCgUGGG--GCCCCACUgCaC-CGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 138775 1.09 0.000911
Target:  5'- cCAGCACCCCGGGGUGACGUGGCACCCc -3'
miRNA:   3'- -GUCGUGGGGCCCCACUGCACCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 139038 0.69 0.502954
Target:  5'- -cGCAUCCCaGGGGcgGaaGCGUGG-ACCCa -3'
miRNA:   3'- guCGUGGGG-CCCCa-C--UGCACCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 140526 0.67 0.615825
Target:  5'- aCAGCaaaccuaGCCCUGGGaGgGAC--GGCACCCc -3'
miRNA:   3'- -GUCG-------UGGGGCCC-CaCUGcaCCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.