miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 170686 0.78 0.140615
Target:  5'- gGGCGCCCCGGGGaccgucGCGggGGCACCg -3'
miRNA:   3'- gUCGUGGGGCCCCac----UGCa-CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 170443 0.66 0.674875
Target:  5'- cCGGCGCgugCCGGGGgacccgggGGCGUGucccGCgACCCg -3'
miRNA:   3'- -GUCGUGg--GGCCCCa-------CUGCAC----CG-UGGG- -5'
29115 3' -62.2 NC_006146.1 + 170406 0.69 0.512149
Target:  5'- gGGgGCCUCGGGGgcgGAgGgggGGguCCCg -3'
miRNA:   3'- gUCgUGGGGCCCCa--CUgCa--CCguGGG- -5'
29115 3' -62.2 NC_006146.1 + 170162 0.7 0.432297
Target:  5'- gCGGCGCCggCCGGGGgcUGAgGgGGCuCCCg -3'
miRNA:   3'- -GUCGUGG--GGCCCC--ACUgCaCCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 170104 0.69 0.493831
Target:  5'- cCGGCGCCgCaGGGGgggccGGCGgGGCGuCCCg -3'
miRNA:   3'- -GUCGUGGgG-CCCCa----CUGCaCCGU-GGG- -5'
29115 3' -62.2 NC_006146.1 + 169988 0.66 0.694061
Target:  5'- -cGCGCgCCCGGGGUcccGGgGggcGGCGCgCg -3'
miRNA:   3'- guCGUG-GGGCCCCA---CUgCa--CCGUGgG- -5'
29115 3' -62.2 NC_006146.1 + 169755 0.71 0.415548
Target:  5'- gGGCGgCCCGGGGacccucGCGggGGCACCg -3'
miRNA:   3'- gUCGUgGGGCCCCac----UGCa-CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 169512 0.66 0.674875
Target:  5'- cCGGCGCgugCCGGGGgacccgggGGCGUGucccGCgACCCg -3'
miRNA:   3'- -GUCGUGg--GGCCCCa-------CUGCAC----CG-UGGG- -5'
29115 3' -62.2 NC_006146.1 + 169475 0.69 0.512149
Target:  5'- gGGgGCCUCGGGGgcgGAgGgggGGguCCCg -3'
miRNA:   3'- gUCgUGGGGCCCCa--CUgCa--CCguGGG- -5'
29115 3' -62.2 NC_006146.1 + 169231 0.7 0.432297
Target:  5'- gCGGCGCCggCCGGGGgcUGAgGgGGCuCCCg -3'
miRNA:   3'- -GUCGUGG--GGCCCC--ACUgCaCCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 169172 0.69 0.475819
Target:  5'- cCGGCGCCUgcaGGGGgggccGGCGgGGCGuCCCg -3'
miRNA:   3'- -GUCGUGGGg--CCCCa----CUGCaCCGU-GGG- -5'
29115 3' -62.2 NC_006146.1 + 169056 0.66 0.694061
Target:  5'- -cGCGCgCCCGGGGUcccGGgGggcGGCGCgCg -3'
miRNA:   3'- guCGUG-GGGCCCCA---CUgCa--CCGUGgG- -5'
29115 3' -62.2 NC_006146.1 + 168823 0.71 0.415548
Target:  5'- gGGCGgCCCGGGGacccucGCGggGGCACCg -3'
miRNA:   3'- gUCGUgGGGCCCCac----UGCa-CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 168580 0.66 0.674875
Target:  5'- cCGGCGCgugCCGGGGgacccgggGGCGUGucccGCgACCCg -3'
miRNA:   3'- -GUCGUGg--GGCCCCa-------CUGCAC----CG-UGGG- -5'
29115 3' -62.2 NC_006146.1 + 168543 0.69 0.512149
Target:  5'- gGGgGCCUCGGGGgcgGAgGgggGGguCCCg -3'
miRNA:   3'- gUCgUGGGGCCCCa--CUgCa--CCguGGG- -5'
29115 3' -62.2 NC_006146.1 + 168299 0.7 0.432297
Target:  5'- gCGGCGCCggCCGGGGgcUGAgGgGGCuCCCg -3'
miRNA:   3'- -GUCGUGG--GGCCCC--ACUgCaCCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 168240 0.69 0.475819
Target:  5'- cCGGCGCCUgcaGGGGgggccGGCGgGGCGuCCCg -3'
miRNA:   3'- -GUCGUGGGg--CCCCa----CUGCaCCGU-GGG- -5'
29115 3' -62.2 NC_006146.1 + 168124 0.66 0.694061
Target:  5'- -cGCGCgCCCGGGGUcccGGgGggcGGCGCgCg -3'
miRNA:   3'- guCGUG-GGGCCCCA---CUgCa--CCGUGgG- -5'
29115 3' -62.2 NC_006146.1 + 167891 0.71 0.415548
Target:  5'- gGGCGgCCCGGGGacccucGCGggGGCACCg -3'
miRNA:   3'- gUCGUgGGGCCCCac----UGCa-CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 167648 0.67 0.636184
Target:  5'- cCGGCGCgugCCGGGGgcccgggGGCGUGucccGCgACCCg -3'
miRNA:   3'- -GUCGUGg--GGCCCCa------CUGCAC----CG-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.