miRNA display CGI


Results 41 - 60 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 153951 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 153889 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 151659 0.67 0.642971
Target:  5'- uGGCgACCCUGGGGUcugucugggggacuGAgGgcGGCGCCUu -3'
miRNA:   3'- gUCG-UGGGGCCCCA--------------CUgCa-CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 150873 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 150811 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 149933 0.75 0.221244
Target:  5'- gUAGCcuGCCCuCGGGGuUGAgG-GGCGCCCa -3'
miRNA:   3'- -GUCG--UGGG-GCCCC-ACUgCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 148581 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5'
29115 3' -62.2 NC_006146.1 + 147795 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 147733 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 147157 0.67 0.636184
Target:  5'- gCGGCAguugaCCCGGcGGcGGCGcagaccGGCGCCCc -3'
miRNA:   3'- -GUCGUg----GGGCC-CCaCUGCa-----CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 145503 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5'
29115 3' -62.2 NC_006146.1 + 144717 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 144656 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 142425 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5'
29115 3' -62.2 NC_006146.1 + 142161 0.72 0.338091
Target:  5'- uGGCcCUuuGGGGaUGAUGUGGCugCUg -3'
miRNA:   3'- gUCGuGGggCCCC-ACUGCACCGugGG- -5'
29115 3' -62.2 NC_006146.1 + 141640 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 141578 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 140526 0.67 0.615825
Target:  5'- aCAGCaaaccuaGCCCUGGGaGgGAC--GGCACCCc -3'
miRNA:   3'- -GUCG-------UGGGGCCC-CaCUGcaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 139038 0.69 0.502954
Target:  5'- -cGCAUCCCaGGGGcgGaaGCGUGG-ACCCa -3'
miRNA:   3'- guCGUGGGG-CCCCa-C--UGCACCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 138775 1.09 0.000911
Target:  5'- cCAGCACCCCGGGGUGACGUGGCACCCc -3'
miRNA:   3'- -GUCGUGGGGCCCCACUGCACCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.