Results 81 - 100 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 113640 | 0.66 | 0.681608 |
Target: 5'- aCGGUGCUCCGGGG-GA--UGGCcuugcugaccacggGCCCg -3' miRNA: 3'- -GUCGUGGGGCCCCaCUgcACCG--------------UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 109339 | 0.68 | 0.54013 |
Target: 5'- uCAGCgugGCCCuCGGGGUGgggaauagacaGCGagGGCGuCCCc -3' miRNA: 3'- -GUCG---UGGG-GCCCCAC-----------UGCa-CCGU-GGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 102896 | 0.67 | 0.636184 |
Target: 5'- gGGgACgCCaGGGGccgugUGGCGUGGCugcGCCCc -3' miRNA: 3'- gUCgUGgGG-CCCC-----ACUGCACCG---UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 102760 | 0.69 | 0.475819 |
Target: 5'- aGGCAgCCCCuuuccuGcGUGGCGUGGCGCCg -3' miRNA: 3'- gUCGU-GGGGcc----C-CACUGCACCGUGGg -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 101284 | 0.77 | 0.174787 |
Target: 5'- cCAGUACCCCGGGG--ACGUGG-GCCUg -3' miRNA: 3'- -GUCGUGGGGCCCCacUGCACCgUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 100750 | 0.68 | 0.56002 |
Target: 5'- cCAGCGCCCCGGccaggagccaGGcGAaggcggcaaagaucaGUGGCACgCCu -3' miRNA: 3'- -GUCGUGGGGCC----------CCaCUg--------------CACCGUG-GG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 100708 | 0.7 | 0.449432 |
Target: 5'- cCGGCGCUgCGGGGgugGGUGUGGgACCg -3' miRNA: 3'- -GUCGUGGgGCCCCa--CUGCACCgUGGg -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 96154 | 0.66 | 0.703588 |
Target: 5'- uGGCcCCCCGGaGGcUGGCucacUGGguCCCu -3' miRNA: 3'- gUCGuGGGGCC-CC-ACUGc---ACCguGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 91772 | 0.73 | 0.296905 |
Target: 5'- gGGUG-CCUGGGGUGcCGUgcuGGCACCCg -3' miRNA: 3'- gUCGUgGGGCCCCACuGCA---CCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 90046 | 0.71 | 0.375472 |
Target: 5'- uGGCACCgCGGGGUGcguuaugcACGUGG-GCCa -3' miRNA: 3'- gUCGUGGgGCCCCAC--------UGCACCgUGGg -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 80090 | 0.68 | 0.559068 |
Target: 5'- aCAGCGCCU--GGGUGGCGacacugGGUGCUCa -3' miRNA: 3'- -GUCGUGGGgcCCCACUGCa-----CCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 76385 | 0.73 | 0.30349 |
Target: 5'- gGGCGCgCCGGGGgaggGACcgggGGCGCCg -3' miRNA: 3'- gUCGUGgGGCCCCa---CUGca--CCGUGGg -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 76099 | 0.7 | 0.45814 |
Target: 5'- gGGCAacCCCCGGGccucggccuacGUgGACGUGGCccgcaacuggGCCCu -3' miRNA: 3'- gUCGU--GGGGCCC-----------CA-CUGCACCG----------UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 75707 | 0.73 | 0.290432 |
Target: 5'- gCAGacCACCCCGGGGUgaggacacugaGACGUGGUuagaacguaACCUg -3' miRNA: 3'- -GUC--GUGGGGCCCCA-----------CUGCACCG---------UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 74845 | 0.66 | 0.666197 |
Target: 5'- -uGCAgCCCuGGGUGAUGggcuucuugacggccGGCACCa -3' miRNA: 3'- guCGUgGGGcCCCACUGCa--------------CCGUGGg -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 71005 | 0.66 | 0.694061 |
Target: 5'- -uGCGCCCgGGGGgca-GaGGCGCCg -3' miRNA: 3'- guCGUGGGgCCCCacugCaCCGUGGg -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 68732 | 0.67 | 0.645879 |
Target: 5'- gAGCugUCgCGGGGUG--GUGGagGCCCa -3' miRNA: 3'- gUCGugGG-GCCCCACugCACCg-UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 64236 | 0.68 | 0.578187 |
Target: 5'- -uGCGCCugggCCGGGGcgggaggGGCGUGGCucGCuCCg -3' miRNA: 3'- guCGUGG----GGCCCCa------CUGCACCG--UG-GG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 63645 | 0.75 | 0.242601 |
Target: 5'- gGGCACCCgGGGGUGAUGaacuaggugGGCuuuCCUg -3' miRNA: 3'- gUCGUGGGgCCCCACUGCa--------CCGu--GGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 62995 | 0.67 | 0.626487 |
Target: 5'- uGGCccuggGCUCCGGGaGUcuGGCG-GGUGCCCg -3' miRNA: 3'- gUCG-----UGGGGCCC-CA--CUGCaCCGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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