miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 34945 1.09 0.000911
Target:  5'- cCAGCACCCCGGGGUGACGUGGCACCCc -3'
miRNA:   3'- -GUCGUGGGGCCCCACUGCACCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 168823 0.71 0.415548
Target:  5'- gGGCGgCCCGGGGacccucGCGggGGCACCg -3'
miRNA:   3'- gUCGUgGGGCCCCac----UGCa-CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 128508 0.7 0.423873
Target:  5'- aCGGCG--UCGGGGUGGCccuggGGCGCCCc -3'
miRNA:   3'- -GUCGUggGGCCCCACUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 34153 0.66 0.703588
Target:  5'- cCGGaGCCCCGgcgaGGGUGGgGgGuGCGCCCc -3'
miRNA:   3'- -GUCgUGGGGC----CCCACUgCaC-CGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 38458 0.75 0.221244
Target:  5'- -uGC-CUCCGGGGUGACG-GGUGCCa -3'
miRNA:   3'- guCGuGGGGCCCCACUGCaCCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 149933 0.75 0.221244
Target:  5'- gUAGCcuGCCCuCGGGGuUGAgG-GGCGCCCa -3'
miRNA:   3'- -GUCG--UGGG-GCCCC-ACUgCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 75707 0.73 0.290432
Target:  5'- gCAGacCACCCCGGGGUgaggacacugaGACGUGGUuagaacguaACCUg -3'
miRNA:   3'- -GUC--GUGGGGCCCCA-----------CUGCACCG---------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 162009 0.72 0.321827
Target:  5'- aGGCACCCUGGgagaccggcuccacGGUGGaGUGGCACUg -3'
miRNA:   3'- gUCGUGGGGCC--------------CCACUgCACCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 137708 0.72 0.345346
Target:  5'- cCGGCcuccCCCCGGGGUGccCG-GGCcuACCCg -3'
miRNA:   3'- -GUCGu---GGGGCCCCACu-GCaCCG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 167891 0.71 0.415548
Target:  5'- gGGCGgCCCGGGGacccucGCGggGGCACCg -3'
miRNA:   3'- gUCGUgGGGCCCCac----UGCa-CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 44427 0.72 0.367776
Target:  5'- gGGC-UCCCGGGGUc---UGGCACCCg -3'
miRNA:   3'- gUCGuGGGGCCCCAcugcACCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 142161 0.72 0.338091
Target:  5'- uGGCcCUuuGGGGaUGAUGUGGCugCUg -3'
miRNA:   3'- gUCGuGGggCCCC-ACUGCACCGugGG- -5'
29115 3' -62.2 NC_006146.1 + 138775 1.09 0.000911
Target:  5'- cCAGCACCCCGGGGUGACGUGGCACCCc -3'
miRNA:   3'- -GUCGUGGGGCCCCACUGCACCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 154188 0.72 0.367776
Target:  5'- aCAGUauccACCCCGGGGcGuCGUGG-ACCUg -3'
miRNA:   3'- -GUCG----UGGGGCCCCaCuGCACCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 170686 0.78 0.140615
Target:  5'- gGGCGCCCCGGGGaccgucGCGggGGCACCg -3'
miRNA:   3'- gUCGUGGGGCCCCac----UGCa-CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 31416 0.72 0.323915
Target:  5'- aGGCACCCCcccGGGUGcCGUGGagACCUu -3'
miRNA:   3'- gUCGUGGGGc--CCCACuGCACCg-UGGG- -5'
29115 3' -62.2 NC_006146.1 + 33693 0.71 0.383276
Target:  5'- cCGGCuuccuCCCCGGGGUGuGCccGGCcuACCCc -3'
miRNA:   3'- -GUCGu----GGGGCCCCAC-UGcaCCG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 169755 0.71 0.415548
Target:  5'- gGGCGgCCCGGGGacccucGCGggGGCACCg -3'
miRNA:   3'- gUCGUgGGGCCCCac----UGCa-CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 129914 0.76 0.18773
Target:  5'- -uGCGCCCUGGGGcgccGGCGcGGCACCa -3'
miRNA:   3'- guCGUGGGGCCCCa---CUGCaCCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 63645 0.75 0.242601
Target:  5'- gGGCACCCgGGGGUGAUGaacuaggugGGCuuuCCUg -3'
miRNA:   3'- gUCGUGGGgCCCCACUGCa--------CCGu--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.