miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 169988 0.66 0.694061
Target:  5'- -cGCGCgCCCGGGGUcccGGgGggcGGCGCgCg -3'
miRNA:   3'- guCGUG-GGGCCCCA---CUgCa--CCGUGgG- -5'
29115 3' -62.2 NC_006146.1 + 33139 0.67 0.616794
Target:  5'- -cGCugCCCcgcuccggguggGGGGUGGCccggcugGGCACCg -3'
miRNA:   3'- guCGugGGG------------CCCCACUGca-----CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 149933 0.75 0.221244
Target:  5'- gUAGCcuGCCCuCGGGGuUGAgG-GGCGCCCa -3'
miRNA:   3'- -GUCG--UGGG-GCCCC-ACUgCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 162009 0.72 0.321827
Target:  5'- aGGCACCCUGGgagaccggcuccacGGUGGaGUGGCACUg -3'
miRNA:   3'- gUCGUGGGGCC--------------CCACUgCACCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 157833 0.72 0.345346
Target:  5'- -cGCugGCCCCGGaGGgGACG-GGCACCg -3'
miRNA:   3'- guCG--UGGGGCC-CCaCUGCaCCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 33693 0.71 0.383276
Target:  5'- cCGGCuuccuCCCCGGGGUGuGCccGGCcuACCCc -3'
miRNA:   3'- -GUCGu----GGGGCCCCAC-UGcaCCG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 48055 0.7 0.432297
Target:  5'- cCAGCGCCCCGGGca-GCGUGcGguCCa -3'
miRNA:   3'- -GUCGUGGGGCCCcacUGCAC-CguGGg -5'
29115 3' -62.2 NC_006146.1 + 169231 0.7 0.432297
Target:  5'- gCGGCGCCggCCGGGGgcUGAgGgGGCuCCCg -3'
miRNA:   3'- -GUCGUGG--GGCCCC--ACUgCaCCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 44952 0.7 0.45814
Target:  5'- gGGCgcggggagGCCCCGGGG-GACucgaccgcgGUGGCcggACCCu -3'
miRNA:   3'- gUCG--------UGGGGCCCCaCUG---------CACCG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 166027 0.66 0.694061
Target:  5'- gGGCA-UCgGGGGUGcCuGUGGCcCCCg -3'
miRNA:   3'- gUCGUgGGgCCCCACuG-CACCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 168580 0.66 0.674875
Target:  5'- cCGGCGCgugCCGGGGgacccgggGGCGUGucccGCgACCCg -3'
miRNA:   3'- -GUCGUGg--GGCCCCa-------CUGCAC----CG-UGGG- -5'
29115 3' -62.2 NC_006146.1 + 115057 0.68 0.529806
Target:  5'- -uGCACCUCGGuguugcuGGUGGcCG-GGUGCCCa -3'
miRNA:   3'- guCGUGGGGCC-------CCACU-GCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 109339 0.68 0.54013
Target:  5'- uCAGCgugGCCCuCGGGGUGgggaauagacaGCGagGGCGuCCCc -3'
miRNA:   3'- -GUCG---UGGG-GCCCCAC-----------UGCa-CCGU-GGG- -5'
29115 3' -62.2 NC_006146.1 + 80090 0.68 0.559068
Target:  5'- aCAGCGCCU--GGGUGGCGacacugGGUGCUCa -3'
miRNA:   3'- -GUCGUGGGgcCCCACUGCa-----CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 52919 0.68 0.587802
Target:  5'- uGGCcCCCCGGGG--GCGcUGGC-CUCg -3'
miRNA:   3'- gUCGuGGGGCCCCacUGC-ACCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 33385 0.67 0.616794
Target:  5'- -cGCugCCCcgcuccggguggGGGGUGGCccgccugGGCACCg -3'
miRNA:   3'- guCGugGGG------------CCCCACUGca-----CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 147157 0.67 0.636184
Target:  5'- gCGGCAguugaCCCGGcGGcGGCGcagaccGGCGCCCc -3'
miRNA:   3'- -GUCGUg----GGGCC-CCaCUGCa-----CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 153889 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 156967 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 35593 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.