miRNA display CGI


Results 81 - 100 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 33456 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 33549 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 101284 0.77 0.174787
Target:  5'- cCAGUACCCCGGGG--ACGUGG-GCCUg -3'
miRNA:   3'- -GUCGUGGGGCCCCacUGCACCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 142425 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5'
29115 3' -62.2 NC_006146.1 + 74845 0.66 0.666197
Target:  5'- -uGCAgCCCuGGGUGAUGggcuucuugacggccGGCACCa -3'
miRNA:   3'- guCGUgGGGcCCCACUGCa--------------CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 3027 0.68 0.576268
Target:  5'- gGGcCGCCCCGGGGcucccccgcgccGAUcUGaGCGCCCa -3'
miRNA:   3'- gUC-GUGGGGCCCCa-----------CUGcAC-CGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 35593 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 35686 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 64236 0.68 0.578187
Target:  5'- -uGCGCCugggCCGGGGcgggaggGGCGUGGCucGCuCCg -3'
miRNA:   3'- guCGUGG----GGCCCCa------CUGCACCG--UG-GG- -5'
29115 3' -62.2 NC_006146.1 + 114327 0.68 0.587802
Target:  5'- uCGGCGCCCggccgccccugaCGGaGGUgGACGggGGCcugGCCCg -3'
miRNA:   3'- -GUCGUGGG------------GCC-CCA-CUGCa-CCG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 118052 0.67 0.597445
Target:  5'- gAGC-CCCCGGGcGggGGCGgcggcGGCucgGCCCu -3'
miRNA:   3'- gUCGuGGGGCCC-Ca-CUGCa----CCG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 145503 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5'
29115 3' -62.2 NC_006146.1 + 153889 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 156967 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 100750 0.68 0.56002
Target:  5'- cCAGCGCCCCGGccaggagccaGGcGAaggcggcaaagaucaGUGGCACgCCu -3'
miRNA:   3'- -GUCGUGGGGCC----------CCaCUg--------------CACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 33921 0.68 0.568607
Target:  5'- cCGGcCACCCCcgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG---------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 115331 0.67 0.595514
Target:  5'- aCGGCACCCCGGacucggucaucgaGGccuuccuggccGGCGUGGCggcggagcuggagGCCCu -3'
miRNA:   3'- -GUCGUGGGGCC-------------CCa----------CUGCACCG-------------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 53597 0.68 0.568607
Target:  5'- aGGgAUgCCGGGGaaagGGCGcGGCACCg -3'
miRNA:   3'- gUCgUGgGGCCCCa---CUGCaCCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 1163 0.68 0.576268
Target:  5'- gGGcCGCCCCGGGGcucccccgcgccGAUcUGaGCGCCCa -3'
miRNA:   3'- gUC-GUGGGGCCCCa-----------CUGcAC-CGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 2095 0.68 0.576268
Target:  5'- gGGcCGCCCCGGGGcucccccgcgccGAUcUGaGCGCCCa -3'
miRNA:   3'- gUC-GUGGGGCCCCa-----------CUGcAC-CGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.