Results 101 - 120 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 27384 | 0.68 | 0.578187 |
Target: 5'- gCAGCAa-CCGGGGcacagacGCGUGGCAucacCCCg -3' miRNA: 3'- -GUCGUggGGCCCCac-----UGCACCGU----GGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 33363 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 33456 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 33549 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 33642 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 33735 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 156967 | 0.68 | 0.543901 |
Target: 5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3' miRNA: 3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 153889 | 0.68 | 0.543901 |
Target: 5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3' miRNA: 3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 34013 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 161744 | 0.72 | 0.331656 |
Target: 5'- ---aGCCCgGGGGUGGCGgcugagguccgagggGGCGCCUg -3' miRNA: 3'- gucgUGGGgCCCCACUGCa--------------CCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 32353 | 0.67 | 0.636184 |
Target: 5'- -cGCACCUCGaGGUaGGauaGgggGGCACCCg -3' miRNA: 3'- guCGUGGGGCcCCA-CUg--Ca--CCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 10102 | 0.67 | 0.616794 |
Target: 5'- gAGgACCCCGGucgaGGCGUGGgucuCACCCu -3' miRNA: 3'- gUCgUGGGGCCcca-CUGCACC----GUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 140526 | 0.67 | 0.615825 |
Target: 5'- aCAGCaaaccuaGCCCUGGGaGgGAC--GGCACCCc -3' miRNA: 3'- -GUCG-------UGGGGCCC-CaCUGcaCCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 118052 | 0.67 | 0.597445 |
Target: 5'- gAGC-CCCCGGGcGggGGCGgcggcGGCucgGCCCu -3' miRNA: 3'- gUCGuGGGGCCC-Ca-CUGCa----CCG---UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 115331 | 0.67 | 0.595514 |
Target: 5'- aCGGCACCCCGGacucggucaucgaGGccuuccuggccGGCGUGGCggcggagcuggagGCCCu -3' miRNA: 3'- -GUCGUGGGGCC-------------CCa----------CUGCACCG-------------UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 114327 | 0.68 | 0.587802 |
Target: 5'- uCGGCGCCCggccgccccugaCGGaGGUgGACGggGGCcugGCCCg -3' miRNA: 3'- -GUCGUGGG------------GCC-CCA-CUGCa-CCG---UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 64236 | 0.68 | 0.578187 |
Target: 5'- -uGCGCCugggCCGGGGcgggaggGGCGUGGCucGCuCCg -3' miRNA: 3'- guCGUGG----GGCCCCa------CUGCACCG--UG-GG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 35686 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 35593 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 34199 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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