miRNA display CGI


Results 121 - 140 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 34664 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 8510 0.7 0.449432
Target:  5'- uGGC-CCaCCGGGGUcccgGGCGcgGGCGCgCCa -3'
miRNA:   3'- gUCGuGG-GGCCCCA----CUGCa-CCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 161744 0.72 0.331656
Target:  5'- ---aGCCCgGGGGUGGCGgcugagguccgagggGGCGCCUg -3'
miRNA:   3'- gucgUGGGgCCCCACUGCa--------------CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 16717 0.72 0.330947
Target:  5'- -cGaCGCCCCGGGGUGGauacUGUGG-ACCUa -3'
miRNA:   3'- guC-GUGGGGCCCCACU----GCACCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 24030 0.73 0.316995
Target:  5'- aGGCGucguCCCCcuggcGGGGUGACGcGGC-CCCg -3'
miRNA:   3'- gUCGU----GGGG-----CCCCACUGCaCCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 42371 0.73 0.310186
Target:  5'- -cGCGCCgCCaGGGUgGGCGaggGGCGCCCc -3'
miRNA:   3'- guCGUGG-GGcCCCA-CUGCa--CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 76385 0.73 0.30349
Target:  5'- gGGCGCgCCGGGGgaggGACcgggGGCGCCg -3'
miRNA:   3'- gUCGUGgGGCCCCa---CUGca--CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 91772 0.73 0.296905
Target:  5'- gGGUG-CCUGGGGUGcCGUgcuGGCACCCg -3'
miRNA:   3'- gUCGUgGGGCCCCACuGCA---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 119087 0.73 0.28407
Target:  5'- -cGcCGCCCCGGGGaacgggUGGCuUGGCGCCUc -3'
miRNA:   3'- guC-GUGGGGCCCC------ACUGcACCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 22386 0.74 0.268045
Target:  5'- gCAGCaugcucuccacccugGCCCCGGGGUccacCGUGGUgACCCa -3'
miRNA:   3'- -GUCG---------------UGGGGCCCCAcu--GCACCG-UGGG- -5'
29115 3' -62.2 NC_006146.1 + 31750 0.72 0.345346
Target:  5'- aGGCGCCCCcccGGGG-GACG-GGaGCCCc -3'
miRNA:   3'- gUCGUGGGG---CCCCaCUGCaCCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 57760 0.72 0.370841
Target:  5'- aCGGauaGCCUCGGGG-GGCGUGGgagauuugaggcagcCGCCCu -3'
miRNA:   3'- -GUCg--UGGGGCCCCaCUGCACC---------------GUGGG- -5'
29115 3' -62.2 NC_006146.1 + 115528 0.7 0.428915
Target:  5'- uCGGUGCCCCGGgcgucccgcgcgcGGUGGCGggGGCuggaggcgaccgcgGCCCu -3'
miRNA:   3'- -GUCGUGGGGCC-------------CCACUGCa-CCG--------------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 157029 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 153951 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 150873 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 147795 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 144717 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 141640 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 50226 0.71 0.383276
Target:  5'- -uGCACCCgCGagauGGUGGCgGUGGCugCCu -3'
miRNA:   3'- guCGUGGG-GCc---CCACUG-CACCGugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.