Results 41 - 60 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 71005 | 0.66 | 0.694061 |
Target: 5'- -uGCGCCCgGGGGgca-GaGGCGCCg -3' miRNA: 3'- guCGUGGGgCCCCacugCaCCGUGGg -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 137023 | 0.66 | 0.694061 |
Target: 5'- gGGCacACCCCGGGGagGAggcCGggugGGgGCCUg -3' miRNA: 3'- gUCG--UGGGGCCCCa-CU---GCa---CCgUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 137210 | 0.66 | 0.694061 |
Target: 5'- gGGCacACCCCGGGGagGAagcCGggugGGgGCCUg -3' miRNA: 3'- gUCG--UGGGGCCCCa-CU---GCa---CCgUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 96154 | 0.66 | 0.703588 |
Target: 5'- uGGCcCCCCGGaGGcUGGCucacUGGguCCCu -3' miRNA: 3'- gUCGuGGGGCC-CC-ACUGc---ACCguGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 122854 | 0.66 | 0.703588 |
Target: 5'- -cGCugCCCGGGGcgcugGACGacccGaGCcgGCCCg -3' miRNA: 3'- guCGugGGGCCCCa----CUGCa---C-CG--UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 74845 | 0.66 | 0.666197 |
Target: 5'- -uGCAgCCCuGGGUGAUGggcuucuugacggccGGCACCa -3' miRNA: 3'- guCGUgGGGcCCCACUGCa--------------CCGUGGg -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 130222 | 0.66 | 0.665231 |
Target: 5'- aAGCACCUCaGGGUG--GUGGCcagGCCg -3' miRNA: 3'- gUCGUGGGGcCCCACugCACCG---UGGg -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 64236 | 0.68 | 0.578187 |
Target: 5'- -uGCGCCugggCCGGGGcgggaggGGCGUGGCucGCuCCg -3' miRNA: 3'- guCGUGG----GGCCCCa------CUGCACCG--UG-GG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 114327 | 0.68 | 0.587802 |
Target: 5'- uCGGCGCCCggccgccccugaCGGaGGUgGACGggGGCcugGCCCg -3' miRNA: 3'- -GUCGUGGG------------GCC-CCA-CUGCa-CCG---UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 115331 | 0.67 | 0.595514 |
Target: 5'- aCGGCACCCCGGacucggucaucgaGGccuuccuggccGGCGUGGCggcggagcuggagGCCCu -3' miRNA: 3'- -GUCGUGGGGCC-------------CCa----------CUGCACCG-------------UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 118052 | 0.67 | 0.597445 |
Target: 5'- gAGC-CCCCGGGcGggGGCGgcggcGGCucgGCCCu -3' miRNA: 3'- gUCGuGGGGCCC-Ca-CUGCa----CCG---UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 140526 | 0.67 | 0.615825 |
Target: 5'- aCAGCaaaccuaGCCCUGGGaGgGAC--GGCACCCc -3' miRNA: 3'- -GUCG-------UGGGGCCC-CaCUGcaCCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 10102 | 0.67 | 0.616794 |
Target: 5'- gAGgACCCCGGucgaGGCGUGGgucuCACCCu -3' miRNA: 3'- gUCgUGGGGCCcca-CUGCACC----GUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 32353 | 0.67 | 0.636184 |
Target: 5'- -cGCACCUCGaGGUaGGauaGgggGGCACCCg -3' miRNA: 3'- guCGUGGGGCcCCA-CUg--Ca--CCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 102896 | 0.67 | 0.636184 |
Target: 5'- gGGgACgCCaGGGGccgugUGGCGUGGCugcGCCCc -3' miRNA: 3'- gUCgUGgGG-CCCC-----ACUGCACCG---UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 151659 | 0.67 | 0.642971 |
Target: 5'- uGGCgACCCUGGGGUcugucugggggacuGAgGgcGGCGCCUu -3' miRNA: 3'- gUCG-UGGGGCCCCA--------------CUgCa-CCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 30129 | 0.67 | 0.645879 |
Target: 5'- gAGCGCCCCcaugcaggGGGGUgGGCaUGGCcacgcAUCCg -3' miRNA: 3'- gUCGUGGGG--------CCCCA-CUGcACCG-----UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 13628 | 0.67 | 0.645879 |
Target: 5'- --cCACCCUGGGGcUGACGaucaaGCGCCg -3' miRNA: 3'- gucGUGGGGCCCC-ACUGCac---CGUGGg -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 123715 | 0.66 | 0.665231 |
Target: 5'- uGGCG-CUCGGGGcGGCGgcgGGCucuCCCc -3' miRNA: 3'- gUCGUgGGGCCCCaCUGCa--CCGu--GGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 25876 | 0.66 | 0.665231 |
Target: 5'- -cGCugCCCGGGaacauUGugGUGGagaGCUCc -3' miRNA: 3'- guCGugGGGCCCc----ACugCACCg--UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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