miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 30129 0.67 0.645879
Target:  5'- gAGCGCCCCcaugcaggGGGGUgGGCaUGGCcacgcAUCCg -3'
miRNA:   3'- gUCGUGGGG--------CCCCA-CUGcACCG-----UGGG- -5'
29115 3' -62.2 NC_006146.1 + 151659 0.67 0.642971
Target:  5'- uGGCgACCCUGGGGUcugucugggggacuGAgGgcGGCGCCUu -3'
miRNA:   3'- gUCG-UGGGGCCCCA--------------CUgCa-CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 35500 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 35407 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 35314 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 35221 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 35128 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 35035 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 34942 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 34850 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 35593 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 35686 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 102896 0.67 0.636184
Target:  5'- gGGgACgCCaGGGGccgugUGGCGUGGCugcGCCCc -3'
miRNA:   3'- gUCgUGgGG-CCCC-----ACUGCACCG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 32353 0.67 0.636184
Target:  5'- -cGCACCUCGaGGUaGGauaGgggGGCACCCg -3'
miRNA:   3'- guCGUGGGGCcCCA-CUg--Ca--CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 10102 0.67 0.616794
Target:  5'- gAGgACCCCGGucgaGGCGUGGgucuCACCCu -3'
miRNA:   3'- gUCgUGGGGCCcca-CUGCACC----GUGGG- -5'
29115 3' -62.2 NC_006146.1 + 140526 0.67 0.615825
Target:  5'- aCAGCaaaccuaGCCCUGGGaGgGAC--GGCACCCc -3'
miRNA:   3'- -GUCG-------UGGGGCCC-CaCUGcaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 118052 0.67 0.597445
Target:  5'- gAGC-CCCCGGGcGggGGCGgcggcGGCucgGCCCu -3'
miRNA:   3'- gUCGuGGGGCCC-Ca-CUGCa----CCG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 115331 0.67 0.595514
Target:  5'- aCGGCACCCCGGacucggucaucgaGGccuuccuggccGGCGUGGCggcggagcuggagGCCCu -3'
miRNA:   3'- -GUCGUGGGGCC-------------CCa----------CUGCACCG-------------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 114327 0.68 0.587802
Target:  5'- uCGGCGCCCggccgccccugaCGGaGGUgGACGggGGCcugGCCCg -3'
miRNA:   3'- -GUCGUGGG------------GCC-CCA-CUGCa-CCG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 64236 0.68 0.578187
Target:  5'- -uGCGCCugggCCGGGGcgggaggGGCGUGGCucGCuCCg -3'
miRNA:   3'- guCGUGG----GGCCCCa------CUGCACCG--UG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.