Results 81 - 100 of 177 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 34385 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 34292 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 34199 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 34106 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 34013 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 33828 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 33735 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 34850 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 34942 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 115331 | 0.67 | 0.595514 |
Target: 5'- aCGGCACCCCGGacucggucaucgaGGccuuccuggccGGCGUGGCggcggagcuggagGCCCu -3' miRNA: 3'- -GUCGUGGGGCC-------------CCa----------CUGCACCG-------------UGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 114327 | 0.68 | 0.587802 |
Target: 5'- uCGGCGCCCggccgccccugaCGGaGGUgGACGggGGCcugGCCCg -3' miRNA: 3'- -GUCGUGGG------------GCC-CCA-CUGCa-CCG---UGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 64236 | 0.68 | 0.578187 |
Target: 5'- -uGCGCCugggCCGGGGcgggaggGGCGUGGCucGCuCCg -3' miRNA: 3'- guCGUGG----GGCCCCa------CUGCACCG--UG-GG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 35686 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 35593 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 35500 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 35407 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 35314 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 35221 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 35128 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
|||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 35035 | 0.68 | 0.578187 |
Target: 5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3' miRNA: 3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home