miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 5' -47.5 NC_006146.1 + 11475 0.66 0.999828
Target:  5'- aUCGGGUGgAguuuauugCGCCUaguUUGCGCAa--- -3'
miRNA:   3'- -AGUCCACgUa-------GUGGA---AACGUGUaaac -5'
29115 5' -47.5 NC_006146.1 + 88795 0.66 0.99964
Target:  5'- aCAGG-GCGUggaGCCUgcuggGCAUGUUUGg -3'
miRNA:   3'- aGUCCaCGUAg--UGGAaa---CGUGUAAAC- -5'
29115 5' -47.5 NC_006146.1 + 166284 0.68 0.998068
Target:  5'- gCAGGgucUGCAUCACCUcgGuCAUGUUUc -3'
miRNA:   3'- aGUCC---ACGUAGUGGAaaC-GUGUAAAc -5'
29115 5' -47.5 NC_006146.1 + 34982 1.1 0.016657
Target:  5'- uUCGGGUGCAUCACCUUUGCACAUUUGg -3'
miRNA:   3'- -AGUCCACGUAGUGGAAACGUGUAAAC- -5'
29115 5' -47.5 NC_006146.1 + 138812 1.11 0.013547
Target:  5'- uUCAGGUGCAUCACCUUUGCACAUUUGg -3'
miRNA:   3'- -AGUCCACGUAGUGGAAACGUGUAAAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.