miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29116 3' -51.2 NC_006146.1 + 24447 0.66 0.995645
Target:  5'- uGCUGcgCCcgcguGUGUGgaCCGCCCa---- -3'
miRNA:   3'- -CGAUuaGG-----UACACgaGGCGGGaaucc -5'
29116 3' -51.2 NC_006146.1 + 33958 0.66 0.995645
Target:  5'- cGCUGGUCCGggugggcGUGgUCCGCU---GGGu -3'
miRNA:   3'- -CGAUUAGGUa------CACgAGGCGGgaaUCC- -5'
29116 3' -51.2 NC_006146.1 + 31862 0.66 0.994113
Target:  5'- --gGGUCCAc--GCuUCCGCCCcUGGGa -3'
miRNA:   3'- cgaUUAGGUacaCG-AGGCGGGaAUCC- -5'
29116 3' -51.2 NC_006146.1 + 22705 0.66 0.991033
Target:  5'- cCUGggCCugAUGUGCUCCGUCUggacgcacgUGGGc -3'
miRNA:   3'- cGAUuaGG--UACACGAGGCGGGa--------AUCC- -5'
29116 3' -51.2 NC_006146.1 + 124805 0.67 0.989763
Target:  5'- uGCUGcUCgCGcgacgGUGCUUCGCCCccgAGGc -3'
miRNA:   3'- -CGAUuAG-GUa----CACGAGGCGGGaa-UCC- -5'
29116 3' -51.2 NC_006146.1 + 152663 0.67 0.986805
Target:  5'- gGCU-GUCCAUGaGCUCC-CCC--AGGc -3'
miRNA:   3'- -CGAuUAGGUACaCGAGGcGGGaaUCC- -5'
29116 3' -51.2 NC_006146.1 + 144184 0.67 0.986805
Target:  5'- cCUGcUCC-UGUGC-CCGCCUcgGGGc -3'
miRNA:   3'- cGAUuAGGuACACGaGGCGGGaaUCC- -5'
29116 3' -51.2 NC_006146.1 + 150340 0.67 0.986805
Target:  5'- cCUGcUCC-UGUGC-CCGCCUcgGGGc -3'
miRNA:   3'- cGAUuAGGuACACGaGGCGGGaaUCC- -5'
29116 3' -51.2 NC_006146.1 + 153418 0.67 0.986805
Target:  5'- cCUGcUCC-UGUGC-CCGCCUcgGGGc -3'
miRNA:   3'- cGAUuAGGuACACGaGGCGGGaaUCC- -5'
29116 3' -51.2 NC_006146.1 + 156496 0.67 0.986805
Target:  5'- cCUGcUCC-UGUGC-CCGCCUcgGGGc -3'
miRNA:   3'- cGAUuAGGuACACGaGGCGGGaaUCC- -5'
29116 3' -51.2 NC_006146.1 + 147262 0.67 0.986805
Target:  5'- cCUGcUCC-UGUGC-CCGCCUcgGGGc -3'
miRNA:   3'- cGAUuAGGuACACGaGGCGGGaaUCC- -5'
29116 3' -51.2 NC_006146.1 + 112849 0.67 0.985098
Target:  5'- aGUUAGUCCcaguUGaGCUgCCGCCaCUUAGa -3'
miRNA:   3'- -CGAUUAGGu---ACaCGA-GGCGG-GAAUCc -5'
29116 3' -51.2 NC_006146.1 + 29155 0.68 0.976554
Target:  5'- cGCUGAgccuUCCcgGUGCaCCGUCCcUGGa -3'
miRNA:   3'- -CGAUU----AGGuaCACGaGGCGGGaAUCc -5'
29116 3' -51.2 NC_006146.1 + 65821 0.68 0.971134
Target:  5'- aGCUGcgCCAgGcGCUCgaGCCCUUugAGGa -3'
miRNA:   3'- -CGAUuaGGUaCaCGAGg-CGGGAA--UCC- -5'
29116 3' -51.2 NC_006146.1 + 99890 0.68 0.971134
Target:  5'- aGCUGAUCCGgcgcCUCUGCCCcccGGGc -3'
miRNA:   3'- -CGAUUAGGUacacGAGGCGGGaa-UCC- -5'
29116 3' -51.2 NC_006146.1 + 88552 0.71 0.921686
Target:  5'- gGCUGcAUCCGUgGUGCUCCGuaaCCCggauauggagcuggUGGGg -3'
miRNA:   3'- -CGAU-UAGGUA-CACGAGGC---GGGa-------------AUCC- -5'
29116 3' -51.2 NC_006146.1 + 51627 0.71 0.913482
Target:  5'- gGC--GUCCGUGUGCUCCagGCUCUggacucccagGGGg -3'
miRNA:   3'- -CGauUAGGUACACGAGG--CGGGAa---------UCC- -5'
29116 3' -51.2 NC_006146.1 + 129628 0.71 0.906061
Target:  5'- cGCcgGGUCCuccgcgggcgcGUGCUCCGCCC--GGGa -3'
miRNA:   3'- -CGa-UUAGGua---------CACGAGGCGGGaaUCC- -5'
29116 3' -51.2 NC_006146.1 + 94636 0.72 0.872888
Target:  5'- gGCcgGGUCCAUGaUGg-CCGCCCUgGGGa -3'
miRNA:   3'- -CGa-UUAGGUAC-ACgaGGCGGGAaUCC- -5'
29116 3' -51.2 NC_006146.1 + 62726 0.73 0.849477
Target:  5'- uGCUGAauaucUCCAgugcUGUGCUCUucuuuGCCCUcAGGg -3'
miRNA:   3'- -CGAUU-----AGGU----ACACGAGG-----CGGGAaUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.