miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29116 5' -62.5 NC_006146.1 + 168366 0.67 0.591154
Target:  5'- gGUCCC-GGGGCGGggG-GUcGGGCg-- -3'
miRNA:   3'- -UAGGGuCCCCGCCuuCgCA-CCUGggu -5'
29116 5' -62.5 NC_006146.1 + 69718 0.67 0.591154
Target:  5'- cUCCgAGGGGCGc-AGCGUGGAgUUg -3'
miRNA:   3'- uAGGgUCCCCGCcuUCGCACCUgGGu -5'
29116 5' -62.5 NC_006146.1 + 170229 0.67 0.591154
Target:  5'- gGUCCC-GGGGCGGggG-GUcGGGCg-- -3'
miRNA:   3'- -UAGGGuCCCCGCCuuCgCA-CCUGggu -5'
29116 5' -62.5 NC_006146.1 + 167434 0.67 0.591154
Target:  5'- gGUCCC-GGGGCGGggG-GUcGGGCg-- -3'
miRNA:   3'- -UAGGGuCCCCGCCuuCgCA-CCUGggu -5'
29116 5' -62.5 NC_006146.1 + 102902 0.67 0.581404
Target:  5'- --gCCAGGGGCcGuguGGCGUGGcugcGCCCc -3'
miRNA:   3'- uagGGUCCCCGcCu--UCGCACC----UGGGu -5'
29116 5' -62.5 NC_006146.1 + 169749 0.67 0.581404
Target:  5'- -gCCCcGGGGCGGcc-CGgGGACCCu -3'
miRNA:   3'- uaGGGuCCCCGCCuucGCaCCUGGGu -5'
29116 5' -62.5 NC_006146.1 + 168817 0.67 0.581404
Target:  5'- -gCCCcGGGGCGGcc-CGgGGACCCu -3'
miRNA:   3'- uaGGGuCCCCGCCuucGCaCCUGGGu -5'
29116 5' -62.5 NC_006146.1 + 167885 0.67 0.581404
Target:  5'- -gCCCcGGGGCGGcc-CGgGGACCCu -3'
miRNA:   3'- uaGGGuCCCCGCCuucGCaCCUGGGu -5'
29116 5' -62.5 NC_006146.1 + 170188 0.67 0.571687
Target:  5'- cUCCCGaGGGCGGGGcCG-GGGCCUg -3'
miRNA:   3'- uAGGGUcCCCGCCUUcGCaCCUGGGu -5'
29116 5' -62.5 NC_006146.1 + 169257 0.67 0.571687
Target:  5'- cUCCCGaGGGCGGGGcCG-GGGCCUg -3'
miRNA:   3'- uAGGGUcCCCGCCUUcGCaCCUGGGu -5'
29116 5' -62.5 NC_006146.1 + 168325 0.67 0.571687
Target:  5'- cUCCCGaGGGCGGGGcCG-GGGCCUg -3'
miRNA:   3'- uAGGGUcCCCGCCUUcGCaCCUGGGu -5'
29116 5' -62.5 NC_006146.1 + 167393 0.67 0.571687
Target:  5'- cUCCCGaGGGCGGGGcCG-GGGCCUg -3'
miRNA:   3'- uAGGGUcCCCGCCUUcGCaCCUGGGu -5'
29116 5' -62.5 NC_006146.1 + 46444 0.67 0.571687
Target:  5'- -cCCCAGGaaGGCGGcGGCGUaGGCCgGa -3'
miRNA:   3'- uaGGGUCC--CCGCCuUCGCAcCUGGgU- -5'
29116 5' -62.5 NC_006146.1 + 48627 0.67 0.552377
Target:  5'- gGUgCCguGGGGGCGGGcuccgGGCG-GGuGCCCAg -3'
miRNA:   3'- -UAgGG--UCCCCGCCU-----UCGCaCC-UGGGU- -5'
29116 5' -62.5 NC_006146.1 + 43585 0.67 0.552377
Target:  5'- uUCCCGGGGaGCGG-GGCGgGaGGCCgGg -3'
miRNA:   3'- uAGGGUCCC-CGCCuUCGCaC-CUGGgU- -5'
29116 5' -62.5 NC_006146.1 + 161764 0.67 0.552377
Target:  5'- gGUCCgaGGGGGCGccuGGGCGgGGGCCUg -3'
miRNA:   3'- -UAGGg-UCCCCGCc--UUCGCaCCUGGGu -5'
29116 5' -62.5 NC_006146.1 + 131112 0.67 0.552377
Target:  5'- cGUCCCAGaaGcCGGGAGCuccGGGCCCAa -3'
miRNA:   3'- -UAGGGUCccC-GCCUUCGca-CCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 96820 0.67 0.542795
Target:  5'- uUCCCugguGGGGaCGGGcgGGCagguUGGGCCCGc -3'
miRNA:   3'- uAGGGu---CCCC-GCCU--UCGc---ACCUGGGU- -5'
29116 5' -62.5 NC_006146.1 + 54422 0.67 0.542795
Target:  5'- -gCCUGGGGGUGGAcuuucAGaaCGUGG-CCCAg -3'
miRNA:   3'- uaGGGUCCCCGCCU-----UC--GCACCuGGGU- -5'
29116 5' -62.5 NC_006146.1 + 33994 0.68 0.526635
Target:  5'- gGUCCggugcaccuggaaggCAGGGGgGGGgucggggcaggcgGGCGUGGuCCCGg -3'
miRNA:   3'- -UAGG---------------GUCCCCgCCU-------------UCGCACCuGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.