miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29117 3' -45.3 NC_006146.1 + 34720 0.66 0.99999
Target:  5'- cCCCCcUAUCCUAccUCGAG-GUg- -3'
miRNA:   3'- -GGGGcAUAGGAU--AGCUCaCAgu -5'
29117 3' -45.3 NC_006146.1 + 138550 0.66 0.99999
Target:  5'- cCCCCcUAUCCUAccUCGAG-GUg- -3'
miRNA:   3'- -GGGGcAUAGGAU--AGCUCaCAgu -5'
29117 3' -45.3 NC_006146.1 + 57663 0.66 0.99999
Target:  5'- gCCCC-UGUCUUAU-GGGUGUCc -3'
miRNA:   3'- -GGGGcAUAGGAUAgCUCACAGu -5'
29117 3' -45.3 NC_006146.1 + 4659 0.67 0.999875
Target:  5'- aCCCCGccGUCCUGggcCGGGUGggCGa -3'
miRNA:   3'- -GGGGCa-UAGGAUa--GCUCACa-GU- -5'
29117 3' -45.3 NC_006146.1 + 19621 0.7 0.997164
Target:  5'- gCCCUGg--CCUucgauAUCGAGUGUCu -3'
miRNA:   3'- -GGGGCauaGGA-----UAGCUCACAGu -5'
29117 3' -45.3 NC_006146.1 + 141206 0.78 0.882857
Target:  5'- cCUCCGUAUCCUAUCaAGUGUg- -3'
miRNA:   3'- -GGGGCAUAGGAUAGcUCACAgu -5'
29117 3' -45.3 NC_006146.1 + 29662 1.06 0.042357
Target:  5'- cCCCCGUAUCCUAUCGAGUGUCAc -3'
miRNA:   3'- -GGGGCAUAGGAUAGCUCACAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.