miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29118 3' -55 NC_006146.1 + 165732 0.66 0.947534
Target:  5'- uCUCGGGCCuGGCCAggaacuuCAGcaGGGCg -3'
miRNA:   3'- -GAGUCUGGuCUGGUacgu---GUCa-CCCG- -5'
29118 3' -55 NC_006146.1 + 91863 0.66 0.947101
Target:  5'- aCUCGGACCAucaucuACCcagaagaggacauGUGCAUGGccUGGGCu -3'
miRNA:   3'- -GAGUCUGGUc-----UGG-------------UACGUGUC--ACCCG- -5'
29118 3' -55 NC_006146.1 + 169274 0.66 0.943097
Target:  5'- --gGGGCCuggcggGGGCCA-GCGCGGggucccgGGGCg -3'
miRNA:   3'- gagUCUGG------UCUGGUaCGUGUCa------CCCG- -5'
29118 3' -55 NC_006146.1 + 110878 0.66 0.943097
Target:  5'- uCUCGGGCuCGGGCgCAgGCGgGGacgGGGCc -3'
miRNA:   3'- -GAGUCUG-GUCUG-GUaCGUgUCa--CCCG- -5'
29118 3' -55 NC_006146.1 + 168342 0.66 0.943097
Target:  5'- --gGGGCCuggcggGGGCCA-GCGCGGggucccgGGGCg -3'
miRNA:   3'- gagUCUGG------UCUGGUaCGUGUCa------CCCG- -5'
29118 3' -55 NC_006146.1 + 140754 0.66 0.943097
Target:  5'- uCUCGGauGCguGGCCAugcccaccccccUGCAUGG-GGGCg -3'
miRNA:   3'- -GAGUC--UGguCUGGU------------ACGUGUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 170205 0.66 0.943097
Target:  5'- --gGGGCCuggcggGGGCCA-GCGCGGggucccgGGGCg -3'
miRNA:   3'- gagUCUGG------UCUGGUaCGUGUCa------CCCG- -5'
29118 3' -55 NC_006146.1 + 147180 0.66 0.943097
Target:  5'- -gCAGACCGGcGCCccuucgcccgGUGCGCAGaggagGGGg -3'
miRNA:   3'- gaGUCUGGUC-UGG----------UACGUGUCa----CCCg -5'
29118 3' -55 NC_006146.1 + 167410 0.66 0.943097
Target:  5'- --gGGGCCuggcggGGGCCA-GCGCGGggucccgGGGCg -3'
miRNA:   3'- gagUCUGG------UCUGGUaCGUGUCa------CCCG- -5'
29118 3' -55 NC_006146.1 + 156231 0.66 0.938422
Target:  5'- -gCGGGCCcccucGGCCGUGgACGGggugccgugguUGGGCa -3'
miRNA:   3'- gaGUCUGGu----CUGGUACgUGUC-----------ACCCG- -5'
29118 3' -55 NC_006146.1 + 126188 0.66 0.938422
Target:  5'- aUCAGGCCGG-CCA---GCGG-GGGCc -3'
miRNA:   3'- gAGUCUGGUCuGGUacgUGUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 114997 0.66 0.938422
Target:  5'- aUCaAGGCCAuGGCCGUGgaGCuGGUGGaGCg -3'
miRNA:   3'- gAG-UCUGGU-CUGGUACg-UG-UCACC-CG- -5'
29118 3' -55 NC_006146.1 + 111664 0.66 0.935502
Target:  5'- uCUCAGAuCCGGGCCAucaagccaaucccccUGCGCGacGGGa -3'
miRNA:   3'- -GAGUCU-GGUCUGGU---------------ACGUGUcaCCCg -5'
29118 3' -55 NC_006146.1 + 105852 0.66 0.933508
Target:  5'- -gUAGACgCAGuGCCGcuccuCGCAGUGGGCc -3'
miRNA:   3'- gaGUCUG-GUC-UGGUac---GUGUCACCCG- -5'
29118 3' -55 NC_006146.1 + 141310 0.66 0.933508
Target:  5'- gUCGGGCU-GGCC-UGC-CAGgGGGCa -3'
miRNA:   3'- gAGUCUGGuCUGGuACGuGUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 144388 0.66 0.933508
Target:  5'- gUCGGGCU-GGCC-UGC-CAGgGGGCa -3'
miRNA:   3'- gAGUCUGGuCUGGuACGuGUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 150544 0.66 0.933508
Target:  5'- gUCGGGCU-GGCC-UGC-CAGgGGGCa -3'
miRNA:   3'- gAGUCUGGuCUGGuACGuGUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 147466 0.66 0.933508
Target:  5'- gUCGGGCU-GGCC-UGC-CAGgGGGCa -3'
miRNA:   3'- gAGUCUGGuCUGGuACGuGUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 153622 0.66 0.933508
Target:  5'- gUCGGGCU-GGCC-UGC-CAGgGGGCa -3'
miRNA:   3'- gAGUCUGGuCUGGuACGuGUCaCCCG- -5'
29118 3' -55 NC_006146.1 + 156699 0.66 0.933508
Target:  5'- gUCGGGCU-GGCC-UGC-CAGgGGGCa -3'
miRNA:   3'- gAGUCUGGuCUGGuACGuGUCaCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.