miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29118 5' -54.4 NC_006146.1 + 39509 0.66 0.942189
Target:  5'- aUUGCcugCUGugGGUgGCugAUGGGCUGGg- -3'
miRNA:   3'- -AACGa--GAUugCCA-CG--UACCUGACCga -5'
29118 5' -54.4 NC_006146.1 + 56842 0.66 0.940285
Target:  5'- -gGcCUCUGGCGGcggggGCGgcagcuuuggcugGGGCUGGCg -3'
miRNA:   3'- aaC-GAGAUUGCCa----CGUa------------CCUGACCGa -5'
29118 5' -54.4 NC_006146.1 + 123365 0.66 0.932267
Target:  5'- -aGCUCUGGCGcugGCcgGGGgccccgcaacCUGGCUg -3'
miRNA:   3'- aaCGAGAUUGCca-CGuaCCU----------GACCGA- -5'
29118 5' -54.4 NC_006146.1 + 170186 0.67 0.903055
Target:  5'- -gGCUCccgagGGCGGgGCcgGGGcCUGGCg -3'
miRNA:   3'- aaCGAGa----UUGCCaCGuaCCU-GACCGa -5'
29118 5' -54.4 NC_006146.1 + 169255 0.67 0.903055
Target:  5'- -gGCUCccgagGGCGGgGCcgGGGcCUGGCg -3'
miRNA:   3'- aaCGAGa----UUGCCaCGuaCCU-GACCGa -5'
29118 5' -54.4 NC_006146.1 + 168323 0.67 0.903055
Target:  5'- -gGCUCccgagGGCGGgGCcgGGGcCUGGCg -3'
miRNA:   3'- aaCGAGa----UUGCCaCGuaCCU-GACCGa -5'
29118 5' -54.4 NC_006146.1 + 167391 0.67 0.903055
Target:  5'- -gGCUCccgagGGCGGgGCcgGGGcCUGGCg -3'
miRNA:   3'- aaCGAGa----UUGCCaCGuaCCU-GACCGa -5'
29118 5' -54.4 NC_006146.1 + 50838 0.67 0.903055
Target:  5'- -gGCUcCUGGCGGUGUccaGGCUGGUg -3'
miRNA:   3'- aaCGA-GAUUGCCACGuacCUGACCGa -5'
29118 5' -54.4 NC_006146.1 + 57370 0.67 0.889632
Target:  5'- -gGCUgcGGCGGUgGCgccgGUGGGCUGGCc -3'
miRNA:   3'- aaCGAgaUUGCCA-CG----UACCUGACCGa -5'
29118 5' -54.4 NC_006146.1 + 38388 0.68 0.88256
Target:  5'- -aGuCUCUGugguGCGGaUGCAUGGGgUGGUg -3'
miRNA:   3'- aaC-GAGAU----UGCC-ACGUACCUgACCGa -5'
29118 5' -54.4 NC_006146.1 + 69990 0.68 0.843791
Target:  5'- -gGCg-UAGCGuaUGCGUGGACUGGCc -3'
miRNA:   3'- aaCGagAUUGCc-ACGUACCUGACCGa -5'
29118 5' -54.4 NC_006146.1 + 125611 0.69 0.835401
Target:  5'- -gGCUUUccaccgaggGugGG-GCAUGGGCUGGUg -3'
miRNA:   3'- aaCGAGA---------UugCCaCGUACCUGACCGa -5'
29118 5' -54.4 NC_006146.1 + 65178 0.69 0.826815
Target:  5'- aUGCccUCUAuGCGGaUGUGUGuGACUGGCa -3'
miRNA:   3'- aACG--AGAU-UGCC-ACGUAC-CUGACCGa -5'
29118 5' -54.4 NC_006146.1 + 170289 0.7 0.742218
Target:  5'- gUGC-CUGGCGGgggagaggggGCA-GGGCUGGCg -3'
miRNA:   3'- aACGaGAUUGCCa---------CGUaCCUGACCGa -5'
29118 5' -54.4 NC_006146.1 + 169358 0.7 0.742218
Target:  5'- gUGC-CUGGCGGgggagaggggGCA-GGGCUGGCg -3'
miRNA:   3'- aACGaGAUUGCCa---------CGUaCCUGACCGa -5'
29118 5' -54.4 NC_006146.1 + 168426 0.7 0.742218
Target:  5'- gUGC-CUGGCGGgggagaggggGCA-GGGCUGGCg -3'
miRNA:   3'- aACGaGAUUGCCa---------CGUaCCUGACCGa -5'
29118 5' -54.4 NC_006146.1 + 167494 0.7 0.742218
Target:  5'- gUGC-CUGGCGGgggagaggggGCA-GGGCUGGCg -3'
miRNA:   3'- aACGaGAUUGCCa---------CGUaCCUGACCGa -5'
29118 5' -54.4 NC_006146.1 + 141448 1.06 0.005278
Target:  5'- aUUGCUCUAACGGUGCAUGGACUGGCUa -3'
miRNA:   3'- -AACGAGAUUGCCACGUACCUGACCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.