miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29119 3' -54.9 NC_006146.1 + 18454 0.66 0.942859
Target:  5'- cGGUGCagaUGCucuACCCGGGGaUCGAcgAGCu- -3'
miRNA:   3'- -CCGCG---AUG---UGGGCCCUaAGCU--UCGuc -5'
29119 3' -54.9 NC_006146.1 + 75384 0.67 0.938213
Target:  5'- aGGCGCcGCACCCGacagcucccGGAUaUgGAGGCc- -3'
miRNA:   3'- -CCGCGaUGUGGGC---------CCUA-AgCUUCGuc -5'
29119 3' -54.9 NC_006146.1 + 170668 0.67 0.93029
Target:  5'- cGGCGCgggggaggccagggGCGcCCCGGGGacCGucGCGGg -3'
miRNA:   3'- -CCGCGa-------------UGU-GGGCCCUaaGCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 105848 0.67 0.93029
Target:  5'- aGGCGCUGCcaagagcucgaggaaGCCgGGGAggcaaGAuAGCGGc -3'
miRNA:   3'- -CCGCGAUG---------------UGGgCCCUaag--CU-UCGUC- -5'
29119 3' -54.9 NC_006146.1 + 52317 0.67 0.928214
Target:  5'- aGGUGCUG-ACCCugacgugggccGGGGUgccCGggGCGGc -3'
miRNA:   3'- -CCGCGAUgUGGG-----------CCCUAa--GCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 155553 0.67 0.928214
Target:  5'- gGGCGUUGgAgCCGGGcucgcgCGggGCGc -3'
miRNA:   3'- -CCGCGAUgUgGGCCCuaa---GCuuCGUc -5'
29119 3' -54.9 NC_006146.1 + 92131 0.67 0.928214
Target:  5'- uGGgGCUGCugCUGGGGggCGGgcccGGCc- -3'
miRNA:   3'- -CCgCGAUGugGGCCCUaaGCU----UCGuc -5'
29119 3' -54.9 NC_006146.1 + 127503 0.67 0.928214
Target:  5'- gGGgGUcGCAgCCGGGGca-GAGGCAGc -3'
miRNA:   3'- -CCgCGaUGUgGGCCCUaagCUUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 92281 0.67 0.928214
Target:  5'- uGGgGCUGCugCUGGGGggCGGgcccGGCc- -3'
miRNA:   3'- -CCgCGAUGugGGCCCUaaGCU----UCGuc -5'
29119 3' -54.9 NC_006146.1 + 92012 0.67 0.928214
Target:  5'- uGGgGCUGCugCUGGGGggCGGgcccGGCc- -3'
miRNA:   3'- -CCgCGAUGugGGCCCUaaGCU----UCGuc -5'
29119 3' -54.9 NC_006146.1 + 92042 0.67 0.928214
Target:  5'- uGGgGCUGCugCUGGGGggCGGgcccGGCc- -3'
miRNA:   3'- -CCgCGAUGugGGCCCUaaGCU----UCGuc -5'
29119 3' -54.9 NC_006146.1 + 92221 0.67 0.928214
Target:  5'- uGGgGCUGCugCUGGGGggCGGgcccGGCc- -3'
miRNA:   3'- -CCgCGAUGugGGCCCUaaGCU----UCGuc -5'
29119 3' -54.9 NC_006146.1 + 92101 0.67 0.928214
Target:  5'- uGGgGCUGCugCUGGGGggCGGgcccGGCc- -3'
miRNA:   3'- -CCgCGAUGugGGCCCUaaGCU----UCGuc -5'
29119 3' -54.9 NC_006146.1 + 92191 0.67 0.928214
Target:  5'- uGGgGCUGCugCUGGGGggCGGgcccGGCc- -3'
miRNA:   3'- -CCgCGAUGugGGCCCUaaGCU----UCGuc -5'
29119 3' -54.9 NC_006146.1 + 92161 0.67 0.928214
Target:  5'- uGGgGCUGCugCUGGGGggCGGgcccGGCc- -3'
miRNA:   3'- -CCgCGAUGugGGCCCUaaGCU----UCGuc -5'
29119 3' -54.9 NC_006146.1 + 131219 0.67 0.92503
Target:  5'- cGGCGCUGCagGCCCaGGAgccCGccgccuccaaggccaAGGCAGu -3'
miRNA:   3'- -CCGCGAUG--UGGGcCCUaa-GC---------------UUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 112101 0.67 0.92286
Target:  5'- -uUGCUugGCUCGGGggUgGAGGUGGu -3'
miRNA:   3'- ccGCGAugUGGGCCCuaAgCUUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 126479 0.67 0.92286
Target:  5'- gGGUGCcagAC-CCCGGGAgccccUCGAGGaAGg -3'
miRNA:   3'- -CCGCGa--UGuGGGCCCUa----AGCUUCgUC- -5'
29119 3' -54.9 NC_006146.1 + 162334 0.67 0.92286
Target:  5'- uGGUGCUGCAgCCCGGGcu-----GCAGc -3'
miRNA:   3'- -CCGCGAUGU-GGGCCCuaagcuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 20585 0.67 0.917268
Target:  5'- cGGC-CUGCGCCCGGG---CGAGGa-- -3'
miRNA:   3'- -CCGcGAUGUGGGCCCuaaGCUUCguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.