miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29119 5' -49.3 NC_006146.1 + 75677 0.66 0.999043
Target:  5'- gUCUcGCUAUGAUgcgCUCUGGuacucUUGGCa -3'
miRNA:   3'- gAGA-CGAUGCUAa--GAGGCCca---AAUCG- -5'
29119 5' -49.3 NC_006146.1 + 5389 0.66 0.999043
Target:  5'- gUCaUGCUGCGuggcaUCCGGGgcu-GCg -3'
miRNA:   3'- gAG-ACGAUGCuaag-AGGCCCaaauCG- -5'
29119 5' -49.3 NC_006146.1 + 14066 0.66 0.998834
Target:  5'- -gCUGgCUGCGGUcCUCCcGGGUcUGGa -3'
miRNA:   3'- gaGAC-GAUGCUAaGAGG-CCCAaAUCg -5'
29119 5' -49.3 NC_006146.1 + 60088 0.66 0.998587
Target:  5'- ---aGCUACGGgcaaUCgCCGGGccggUUGGCg -3'
miRNA:   3'- gagaCGAUGCUa---AGaGGCCCa---AAUCG- -5'
29119 5' -49.3 NC_006146.1 + 33139 0.67 0.997565
Target:  5'- ---cGCUGCcccgCUCCGGGUggggggUGGCc -3'
miRNA:   3'- gagaCGAUGcuaaGAGGCCCAa-----AUCG- -5'
29119 5' -49.3 NC_006146.1 + 33263 0.67 0.997565
Target:  5'- ---cGCUGCcccgCUCCGGGUggggggUGGCc -3'
miRNA:   3'- gagaCGAUGcuaaGAGGCCCAa-----AUCG- -5'
29119 5' -49.3 NC_006146.1 + 33385 0.67 0.997565
Target:  5'- ---cGCUGCcccgCUCCGGGUggggggUGGCc -3'
miRNA:   3'- gagaCGAUGcuaaGAGGCCCAa-----AUCG- -5'
29119 5' -49.3 NC_006146.1 + 128843 0.67 0.996587
Target:  5'- -cCUGUcGCGAaUCUCCcuaGGGUcgAGCu -3'
miRNA:   3'- gaGACGaUGCUaAGAGG---CCCAaaUCG- -5'
29119 5' -49.3 NC_006146.1 + 125989 0.69 0.988991
Target:  5'- aCUCgcgGCUGCGAggCUUgGGaGUgggGGCg -3'
miRNA:   3'- -GAGa--CGAUGCUaaGAGgCC-CAaa-UCG- -5'
29119 5' -49.3 NC_006146.1 + 113631 0.69 0.983998
Target:  5'- gUCaGCUugACGGUgCUCCGGGggaUGGCc -3'
miRNA:   3'- gAGaCGA--UGCUAaGAGGCCCaa-AUCG- -5'
29119 5' -49.3 NC_006146.1 + 30596 0.72 0.954878
Target:  5'- ---cGUUGCGGUUCaaUCCGGGg--GGCa -3'
miRNA:   3'- gagaCGAUGCUAAG--AGGCCCaaaUCG- -5'
29119 5' -49.3 NC_006146.1 + 28560 0.74 0.901885
Target:  5'- -aCUGCUuCGAaUC-CCGGGUgUAGCg -3'
miRNA:   3'- gaGACGAuGCUaAGaGGCCCAaAUCG- -5'
29119 5' -49.3 NC_006146.1 + 142375 1.14 0.0072
Target:  5'- cCUCUGCUACGAUUCUCCGGGUUUAGCa -3'
miRNA:   3'- -GAGACGAUGCUAAGAGGCCCAAAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.