Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29119 | 5' | -49.3 | NC_006146.1 | + | 142375 | 1.14 | 0.0072 |
Target: 5'- cCUCUGCUACGAUUCUCCGGGUUUAGCa -3' miRNA: 3'- -GAGACGAUGCUAAGAGGCCCAAAUCG- -5' |
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29119 | 5' | -49.3 | NC_006146.1 | + | 128843 | 0.67 | 0.996587 |
Target: 5'- -cCUGUcGCGAaUCUCCcuaGGGUcgAGCu -3' miRNA: 3'- gaGACGaUGCUaAGAGG---CCCAaaUCG- -5' |
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29119 | 5' | -49.3 | NC_006146.1 | + | 125989 | 0.69 | 0.988991 |
Target: 5'- aCUCgcgGCUGCGAggCUUgGGaGUgggGGCg -3' miRNA: 3'- -GAGa--CGAUGCUaaGAGgCC-CAaa-UCG- -5' |
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29119 | 5' | -49.3 | NC_006146.1 | + | 113631 | 0.69 | 0.983998 |
Target: 5'- gUCaGCUugACGGUgCUCCGGGggaUGGCc -3' miRNA: 3'- gAGaCGA--UGCUAaGAGGCCCaa-AUCG- -5' |
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29119 | 5' | -49.3 | NC_006146.1 | + | 75677 | 0.66 | 0.999043 |
Target: 5'- gUCUcGCUAUGAUgcgCUCUGGuacucUUGGCa -3' miRNA: 3'- gAGA-CGAUGCUAa--GAGGCCca---AAUCG- -5' |
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29119 | 5' | -49.3 | NC_006146.1 | + | 60088 | 0.66 | 0.998587 |
Target: 5'- ---aGCUACGGgcaaUCgCCGGGccggUUGGCg -3' miRNA: 3'- gagaCGAUGCUa---AGaGGCCCa---AAUCG- -5' |
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29119 | 5' | -49.3 | NC_006146.1 | + | 33385 | 0.67 | 0.997565 |
Target: 5'- ---cGCUGCcccgCUCCGGGUggggggUGGCc -3' miRNA: 3'- gagaCGAUGcuaaGAGGCCCAa-----AUCG- -5' |
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29119 | 5' | -49.3 | NC_006146.1 | + | 33263 | 0.67 | 0.997565 |
Target: 5'- ---cGCUGCcccgCUCCGGGUggggggUGGCc -3' miRNA: 3'- gagaCGAUGcuaaGAGGCCCAa-----AUCG- -5' |
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29119 | 5' | -49.3 | NC_006146.1 | + | 33139 | 0.67 | 0.997565 |
Target: 5'- ---cGCUGCcccgCUCCGGGUggggggUGGCc -3' miRNA: 3'- gagaCGAUGcuaaGAGGCCCAa-----AUCG- -5' |
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29119 | 5' | -49.3 | NC_006146.1 | + | 30596 | 0.72 | 0.954878 |
Target: 5'- ---cGUUGCGGUUCaaUCCGGGg--GGCa -3' miRNA: 3'- gagaCGAUGCUAAG--AGGCCCaaaUCG- -5' |
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29119 | 5' | -49.3 | NC_006146.1 | + | 28560 | 0.74 | 0.901885 |
Target: 5'- -aCUGCUuCGAaUC-CCGGGUgUAGCg -3' miRNA: 3'- gaGACGAuGCUaAGaGGCCCAaAUCG- -5' |
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29119 | 5' | -49.3 | NC_006146.1 | + | 14066 | 0.66 | 0.998834 |
Target: 5'- -gCUGgCUGCGGUcCUCCcGGGUcUGGa -3' miRNA: 3'- gaGAC-GAUGCUAaGAGG-CCCAaAUCg -5' |
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29119 | 5' | -49.3 | NC_006146.1 | + | 5389 | 0.66 | 0.999043 |
Target: 5'- gUCaUGCUGCGuggcaUCCGGGgcu-GCg -3' miRNA: 3'- gAG-ACGAUGCuaag-AGGCCCaaauCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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