miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2912 3' -52.8 NC_001493.1 + 74142 0.66 0.963778
Target:  5'- cUUCC-AGC-UGUGAUGU-AGCGCACa -3'
miRNA:   3'- cAAGGuUCGcGCAUUGCAcUCGCGUG- -5'
2912 3' -52.8 NC_001493.1 + 124884 0.66 0.960185
Target:  5'- -aUCCuc-CGCGgagGACGUGgAGCGCGu -3'
miRNA:   3'- caAGGuucGCGCa--UUGCAC-UCGCGUg -5'
2912 3' -52.8 NC_001493.1 + 9330 0.66 0.960185
Target:  5'- -aUCCuc-CGCGgagGACGUGgAGCGCGu -3'
miRNA:   3'- caAGGuucGCGCa--UUGCAC-UCGCGUg -5'
2912 3' -52.8 NC_001493.1 + 123751 0.66 0.952277
Target:  5'- --cCCGAGCG-GUGACGaaggaGGGCGgGCa -3'
miRNA:   3'- caaGGUUCGCgCAUUGCa----CUCGCgUG- -5'
2912 3' -52.8 NC_001493.1 + 8197 0.66 0.952277
Target:  5'- --cCCGAGCG-GUGACGaaggaGGGCGgGCa -3'
miRNA:   3'- caaGGUUCGCgCAUUGCa----CUCGCgUG- -5'
2912 3' -52.8 NC_001493.1 + 88109 0.67 0.92812
Target:  5'- -cUCCAGGCGCcgauccCGUGAGC-CAUg -3'
miRNA:   3'- caAGGUUCGCGcauu--GCACUCGcGUG- -5'
2912 3' -52.8 NC_001493.1 + 19613 0.68 0.904168
Target:  5'- -cUCCGAGUGUagugcgggggGUGACGUGGGgGCc- -3'
miRNA:   3'- caAGGUUCGCG----------CAUUGCACUCgCGug -5'
2912 3' -52.8 NC_001493.1 + 28604 0.68 0.890668
Target:  5'- -aUCUcGGuCGCGUGccugucgGUGAGCGCACg -3'
miRNA:   3'- caAGGuUC-GCGCAUug-----CACUCGCGUG- -5'
2912 3' -52.8 NC_001493.1 + 17073 0.68 0.890668
Target:  5'- -aUCCAcGCGCGUGGCuccGuGCGUGCg -3'
miRNA:   3'- caAGGUuCGCGCAUUGca-CuCGCGUG- -5'
2912 3' -52.8 NC_001493.1 + 132627 0.68 0.890668
Target:  5'- -aUCCAcGCGCGUGGCuccGuGCGUGCg -3'
miRNA:   3'- caAGGUuCGCGCAUUGca-CuCGCGUG- -5'
2912 3' -52.8 NC_001493.1 + 35775 0.69 0.85596
Target:  5'- aGUUCgGAGCuGCGUGcggugaccacgucucGCGUGAGCugguGCAUg -3'
miRNA:   3'- -CAAGgUUCG-CGCAU---------------UGCACUCG----CGUG- -5'
2912 3' -52.8 NC_001493.1 + 15116 0.69 0.852714
Target:  5'- -gUCCAggAGCG-GUAGCGgGAGCGCu- -3'
miRNA:   3'- caAGGU--UCGCgCAUUGCaCUCGCGug -5'
2912 3' -52.8 NC_001493.1 + 130670 0.69 0.852714
Target:  5'- -gUCCAggAGCG-GUAGCGgGAGCGCu- -3'
miRNA:   3'- caAGGU--UCGCgCAUUGCaCUCGCGug -5'
2912 3' -52.8 NC_001493.1 + 44105 0.71 0.781238
Target:  5'- aGUUCCAAGCGCucuuUGACGauuacauGCGCGCc -3'
miRNA:   3'- -CAAGGUUCGCGc---AUUGCacu----CGCGUG- -5'
2912 3' -52.8 NC_001493.1 + 24320 0.71 0.781238
Target:  5'- --aCCGAGCGCGUcuuGCGaagcUGGGCGgACu -3'
miRNA:   3'- caaGGUUCGCGCAu--UGC----ACUCGCgUG- -5'
2912 3' -52.8 NC_001493.1 + 79120 0.71 0.751788
Target:  5'- aGUUCCAGGUccuggaccaGCGUGuucGCGUccGCGCACg -3'
miRNA:   3'- -CAAGGUUCG---------CGCAU---UGCAcuCGCGUG- -5'
2912 3' -52.8 NC_001493.1 + 102223 0.73 0.65841
Target:  5'- --gCCAGGguCGCGUGGCugaUGAGCGCGCu -3'
miRNA:   3'- caaGGUUC--GCGCAUUGc--ACUCGCGUG- -5'
2912 3' -52.8 NC_001493.1 + 40188 1.11 0.003495
Target:  5'- aGUUCCAAGCGCGUAACGUGAGCGCACg -3'
miRNA:   3'- -CAAGGUUCGCGCAUUGCACUCGCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.