miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2912 5' -61.8 NC_001493.1 + 93259 0.66 0.662119
Target:  5'- aGGGUgugaguuuacCCcCUCgGCGgaACCCCCCACGg -3'
miRNA:   3'- -CCCA----------GGcGAGgUGUggUGGGGGGUGU- -5'
2912 5' -61.8 NC_001493.1 + 19191 0.66 0.652262
Target:  5'- -cGUCCGUa-CACACCAUgUCCCACu -3'
miRNA:   3'- ccCAGGCGagGUGUGGUGgGGGGUGu -5'
2912 5' -61.8 NC_001493.1 + 117651 0.66 0.632511
Target:  5'- uGGG-CCgaGCUCUAUccucCCGCCCCUCGCc -3'
miRNA:   3'- -CCCaGG--CGAGGUGu---GGUGGGGGGUGu -5'
2912 5' -61.8 NC_001493.1 + 2096 0.66 0.632511
Target:  5'- uGGG-CCgaGCUCUAUccucCCGCCCCUCGCc -3'
miRNA:   3'- -CCCaGG--CGAGGUGu---GGUGGGGGGUGu -5'
2912 5' -61.8 NC_001493.1 + 21227 0.66 0.632511
Target:  5'- aGGcCCGacCUUCAgGCCGCCgCCCCugGu -3'
miRNA:   3'- cCCaGGC--GAGGUgUGGUGG-GGGGugU- -5'
2912 5' -61.8 NC_001493.1 + 108958 0.66 0.602899
Target:  5'- cGGGUCCagGCcCgGCACCuCCUCCCGu- -3'
miRNA:   3'- -CCCAGG--CGaGgUGUGGuGGGGGGUgu -5'
2912 5' -61.8 NC_001493.1 + 44609 0.67 0.593061
Target:  5'- uGGUCCG-UCCugACCAauuuCUCCCCGg- -3'
miRNA:   3'- cCCAGGCgAGGugUGGU----GGGGGGUgu -5'
2912 5' -61.8 NC_001493.1 + 87159 0.67 0.583248
Target:  5'- cGGGUCCGgUCguCACGCCACCagUgGCGg -3'
miRNA:   3'- -CCCAGGCgAG--GUGUGGUGGggGgUGU- -5'
2912 5' -61.8 NC_001493.1 + 80128 0.67 0.583248
Target:  5'- aGGUCCcCgacCCugGCCAuggacgggauCCCCCCGCu -3'
miRNA:   3'- cCCAGGcGa--GGugUGGU----------GGGGGGUGu -5'
2912 5' -61.8 NC_001493.1 + 36399 0.67 0.573469
Target:  5'- -cGUCCGCgcaacCCGCcCCACugagcaCCCCCGCGc -3'
miRNA:   3'- ccCAGGCGa----GGUGuGGUG------GGGGGUGU- -5'
2912 5' -61.8 NC_001493.1 + 119723 0.67 0.573469
Target:  5'- cGGUCaccguGCUCUccaccuGCACCACaCCCCAUAg -3'
miRNA:   3'- cCCAGg----CGAGG------UGUGGUGgGGGGUGU- -5'
2912 5' -61.8 NC_001493.1 + 88492 0.67 0.573469
Target:  5'- -aGUCCGCUgagcCCACAuCCACa-CCCGCAu -3'
miRNA:   3'- ccCAGGCGA----GGUGU-GGUGggGGGUGU- -5'
2912 5' -61.8 NC_001493.1 + 4169 0.67 0.573469
Target:  5'- cGGUCaccguGCUCUccaccuGCACCACaCCCCAUAg -3'
miRNA:   3'- cCCAGg----CGAGG------UGUGGUGgGGGGUGU- -5'
2912 5' -61.8 NC_001493.1 + 93797 0.67 0.573469
Target:  5'- aGGG-CCGCUCCGCAa-GCggucgUCCCCAUg -3'
miRNA:   3'- -CCCaGGCGAGGUGUggUG-----GGGGGUGu -5'
2912 5' -61.8 NC_001493.1 + 125920 0.67 0.544385
Target:  5'- --cUCCcucUUCCACAUCcCCCCCCACAu -3'
miRNA:   3'- cccAGGc--GAGGUGUGGuGGGGGGUGU- -5'
2912 5' -61.8 NC_001493.1 + 10366 0.67 0.544385
Target:  5'- --cUCCcucUUCCACAUCcCCCCCCACAu -3'
miRNA:   3'- cccAGGc--GAGGUGUGGuGGGGGGUGU- -5'
2912 5' -61.8 NC_001493.1 + 43865 0.68 0.525264
Target:  5'- uGGUCU-CUCCcacaaACACCGCCCUCgCGCAc -3'
miRNA:   3'- cCCAGGcGAGG-----UGUGGUGGGGG-GUGU- -5'
2912 5' -61.8 NC_001493.1 + 19748 0.68 0.525264
Target:  5'- aGGGUaCGCUCCcgcgGCACCGgggaUCCCCAUg -3'
miRNA:   3'- -CCCAgGCGAGG----UGUGGUg---GGGGGUGu -5'
2912 5' -61.8 NC_001493.1 + 21061 0.68 0.515798
Target:  5'- cGGGUaCGCUCCcgcgGCACCGgggaUCCCCAUg -3'
miRNA:   3'- -CCCAgGCGAGG----UGUGGUg---GGGGGUGu -5'
2912 5' -61.8 NC_001493.1 + 28541 0.68 0.506402
Target:  5'- aGGGUgCGCUUCACAcgcccgaguuCCGCCUcgaguccauCCCGCGc -3'
miRNA:   3'- -CCCAgGCGAGGUGU----------GGUGGG---------GGGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.