miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29120 3' -57.7 NC_006146.1 + 29147 0.66 0.872196
Target:  5'- gGaGAGCCGCCUuaCCUcuccccUGGc-CUGUCCu -3'
miRNA:   3'- gC-CUCGGCGGA--GGA------ACCaaGACAGGu -5'
29120 3' -57.7 NC_006146.1 + 26069 0.66 0.872196
Target:  5'- gGaGAGCCGCCUuaCCUcuccccUGGc-CUGUCCu -3'
miRNA:   3'- gC-CUCGGCGGA--GGA------ACCaaGACAGGu -5'
29120 3' -57.7 NC_006146.1 + 22991 0.66 0.872196
Target:  5'- gGaGAGCCGCCUuaCCUcuccccUGGc-CUGUCCu -3'
miRNA:   3'- gC-CUCGGCGGA--GGA------ACCaaGACAGGu -5'
29120 3' -57.7 NC_006146.1 + 19914 0.66 0.872196
Target:  5'- gGaGAGCCGCCUuaCCUcuccccUGGc-CUGUCCu -3'
miRNA:   3'- gC-CUCGGCGGA--GGA------ACCaaGACAGGu -5'
29120 3' -57.7 NC_006146.1 + 16836 0.66 0.872196
Target:  5'- gGaGAGCCGCCUuaCCUcuccccUGGc-CUGUCCu -3'
miRNA:   3'- gC-CUCGGCGGA--GGA------ACCaaGACAGGu -5'
29120 3' -57.7 NC_006146.1 + 13758 0.66 0.872196
Target:  5'- gGaGAGCCGCCUuaCCUcuccccUGGc-CUGUCCu -3'
miRNA:   3'- gC-CUCGGCGGA--GGA------ACCaaGACAGGu -5'
29120 3' -57.7 NC_006146.1 + 77965 0.67 0.837019
Target:  5'- cCGGAGCCGgUggCCUUGGaggugccgguccucUCUGUCUg -3'
miRNA:   3'- -GCCUCGGCgGa-GGAACCa-------------AGACAGGu -5'
29120 3' -57.7 NC_006146.1 + 149609 0.67 0.833771
Target:  5'- aGGcuGGCCGCCUCCUUuacccGGgc--GUCCGc -3'
miRNA:   3'- gCC--UCGGCGGAGGAA-----CCaagaCAGGU- -5'
29120 3' -57.7 NC_006146.1 + 84944 0.67 0.805067
Target:  5'- aCGGAGgCGCCUCgCUUGGggggggcaaaGUCCc -3'
miRNA:   3'- -GCCUCgGCGGAG-GAACCaaga------CAGGu -5'
29120 3' -57.7 NC_006146.1 + 124194 0.67 0.790935
Target:  5'- uCGGAGCCGCCgcggCCgacucuuacUGGgacUCcugGUCCGa -3'
miRNA:   3'- -GCCUCGGCGGa---GGa--------ACCa--AGa--CAGGU- -5'
29120 3' -57.7 NC_006146.1 + 109148 0.7 0.656079
Target:  5'- aGGccucGGCCGCUgCCUUGGUUUcgGUCCc -3'
miRNA:   3'- gCC----UCGGCGGaGGAACCAAGa-CAGGu -5'
29120 3' -57.7 NC_006146.1 + 45530 0.73 0.479246
Target:  5'- gGGGGCCuggGCCUCCUUGGgcUUGgCCGc -3'
miRNA:   3'- gCCUCGG---CGGAGGAACCaaGACaGGU- -5'
29120 3' -57.7 NC_006146.1 + 142492 1.08 0.002532
Target:  5'- cCGGAGCCGCCUCCUUGGUUCUGUCCAc -3'
miRNA:   3'- -GCCUCGGCGGAGGAACCAAGACAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.