miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29120 5' -50.4 NC_006146.1 + 142527 1.1 0.008571
Target:  5'- uGCUGCACAUAACCAUGGAGGUGGUUGc -3'
miRNA:   3'- -CGACGUGUAUUGGUACCUCCACCAAC- -5'
29120 5' -50.4 NC_006146.1 + 84530 0.79 0.533382
Target:  5'- uGCcgGUACAggcGCCGUGGcAGGUGGUUGg -3'
miRNA:   3'- -CGa-CGUGUau-UGGUACC-UCCACCAAC- -5'
29120 5' -50.4 NC_006146.1 + 64663 0.76 0.702059
Target:  5'- --gGCACGUcGCCGUGGuAGGUGGUc- -3'
miRNA:   3'- cgaCGUGUAuUGGUACC-UCCACCAac -5'
29120 5' -50.4 NC_006146.1 + 44611 0.73 0.861925
Target:  5'- cGUUGCAUgauagaAUGGCCAUGG-GGUGGa-- -3'
miRNA:   3'- -CGACGUG------UAUUGGUACCuCCACCaac -5'
29120 5' -50.4 NC_006146.1 + 54032 0.7 0.948618
Target:  5'- uGCUGCGCcUGGCCGggccGGAuGUGGUg- -3'
miRNA:   3'- -CGACGUGuAUUGGUa---CCUcCACCAac -5'
29120 5' -50.4 NC_006146.1 + 59425 0.7 0.948618
Target:  5'- aGgaGCAaGUAugCcgGGGGGUGGUUu -3'
miRNA:   3'- -CgaCGUgUAUugGuaCCUCCACCAAc -5'
29120 5' -50.4 NC_006146.1 + 115002 0.7 0.960741
Target:  5'- --gGC-CAUGGCCGUGGAGcUGGUg- -3'
miRNA:   3'- cgaCGuGUAUUGGUACCUCcACCAac -5'
29120 5' -50.4 NC_006146.1 + 143630 0.69 0.970727
Target:  5'- aGCcgGCG-AUGACgGUGGAGGUGGc-- -3'
miRNA:   3'- -CGa-CGUgUAUUGgUACCUCCACCaac -5'
29120 5' -50.4 NC_006146.1 + 152863 0.69 0.970727
Target:  5'- aGCcgGCG-AUGACgGUGGAGGUGGc-- -3'
miRNA:   3'- -CGa-CGUgUAUUGgUACCUCCACCaac -5'
29120 5' -50.4 NC_006146.1 + 155941 0.69 0.970727
Target:  5'- aGCcgGCG-AUGACgGUGGAGGUGGc-- -3'
miRNA:   3'- -CGa-CGUgUAUUGgUACCUCCACCaac -5'
29120 5' -50.4 NC_006146.1 + 149785 0.69 0.970727
Target:  5'- aGCcgGCG-AUGACgGUGGAGGUGGc-- -3'
miRNA:   3'- -CGa-CGUgUAUUGgUACCUCCACCaac -5'
29120 5' -50.4 NC_006146.1 + 146707 0.69 0.970727
Target:  5'- aGCcgGCG-AUGACgGUGGAGGUGGc-- -3'
miRNA:   3'- -CGa-CGUgUAUUGgUACCUCCACCaac -5'
29120 5' -50.4 NC_006146.1 + 67231 0.69 0.973608
Target:  5'- gGCcagGCACAggaAGCCAcGGAGGcUGGggGg -3'
miRNA:   3'- -CGa--CGUGUa--UUGGUaCCUCC-ACCaaC- -5'
29120 5' -50.4 NC_006146.1 + 92884 0.68 0.981017
Target:  5'- gGCUGUGCAUGugguCUAUGGAGGaucacugugGGUa- -3'
miRNA:   3'- -CGACGUGUAUu---GGUACCUCCa--------CCAac -5'
29120 5' -50.4 NC_006146.1 + 153140 0.68 0.985009
Target:  5'- cUUGCGCAgugUGACCGUGGcc-UGGUUGa -3'
miRNA:   3'- cGACGUGU---AUUGGUACCuccACCAAC- -5'
29120 5' -50.4 NC_006146.1 + 48587 0.68 0.986748
Target:  5'- --gGCACAagAGCCAgacgaUGGGGGUGGc-- -3'
miRNA:   3'- cgaCGUGUa-UUGGU-----ACCUCCACCaac -5'
29120 5' -50.4 NC_006146.1 + 148536 0.68 0.986748
Target:  5'- uGCUGCugGccacuGCCAUGauGGGUGGUg- -3'
miRNA:   3'- -CGACGugUau---UGGUACc-UCCACCAac -5'
29120 5' -50.4 NC_006146.1 + 13905 0.67 0.989756
Target:  5'- gGCcGCGCGUGACUuuuuggaaggaGUGGcGGGUGGg-- -3'
miRNA:   3'- -CGaCGUGUAUUGG-----------UACC-UCCACCaac -5'
29120 5' -50.4 NC_006146.1 + 65478 0.67 0.989756
Target:  5'- gGCUGUGCGggugcugagcUGGCCggcGUGGGGcUGGUUGg -3'
miRNA:   3'- -CGACGUGU----------AUUGG---UACCUCcACCAAC- -5'
29120 5' -50.4 NC_006146.1 + 89482 0.67 0.990922
Target:  5'- gGUUGCGgGUAACCGgugaGGAGGcagaugaUGGUUc -3'
miRNA:   3'- -CGACGUgUAUUGGUa---CCUCC-------ACCAAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.