Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29120 | 5' | -50.4 | NC_006146.1 | + | 143630 | 0.69 | 0.970727 |
|
Target: 5'- aGCcgGCG-AUGACgGUGGAGGUGGc-- -3' miRNA: 3'- -CGa-CGUgUAUUGgUACCUCCACCaac -5' |
|||||||
| 29120 | 5' | -50.4 | NC_006146.1 | + | 115002 | 0.7 | 0.960741 |
|
Target: 5'- --gGC-CAUGGCCGUGGAGcUGGUg- -3' miRNA: 3'- cgaCGuGUAUUGGUACCUCcACCAac -5' |
|||||||
| 29120 | 5' | -50.4 | NC_006146.1 | + | 59425 | 0.7 | 0.948618 |
|
Target: 5'- aGgaGCAaGUAugCcgGGGGGUGGUUu -3' miRNA: 3'- -CgaCGUgUAUugGuaCCUCCACCAAc -5' |
|||||||
| 29120 | 5' | -50.4 | NC_006146.1 | + | 54032 | 0.7 | 0.948618 |
|
Target: 5'- uGCUGCGCcUGGCCGggccGGAuGUGGUg- -3' miRNA: 3'- -CGACGUGuAUUGGUa---CCUcCACCAac -5' |
|||||||
| 29120 | 5' | -50.4 | NC_006146.1 | + | 44611 | 0.73 | 0.861925 |
|
Target: 5'- cGUUGCAUgauagaAUGGCCAUGG-GGUGGa-- -3' miRNA: 3'- -CGACGUG------UAUUGGUACCuCCACCaac -5' |
|||||||
| 29120 | 5' | -50.4 | NC_006146.1 | + | 64663 | 0.76 | 0.702059 |
|
Target: 5'- --gGCACGUcGCCGUGGuAGGUGGUc- -3' miRNA: 3'- cgaCGUGUAuUGGUACC-UCCACCAac -5' |
|||||||
| 29120 | 5' | -50.4 | NC_006146.1 | + | 84530 | 0.79 | 0.533382 |
|
Target: 5'- uGCcgGUACAggcGCCGUGGcAGGUGGUUGg -3' miRNA: 3'- -CGa-CGUGUau-UGGUACC-UCCACCAAC- -5' |
|||||||
| 29120 | 5' | -50.4 | NC_006146.1 | + | 142527 | 1.1 | 0.008571 |
|
Target: 5'- uGCUGCACAUAACCAUGGAGGUGGUUGc -3' miRNA: 3'- -CGACGUGUAUUGGUACCUCCACCAAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home