Results 21 - 40 of 159 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29121 | 5' | -60.9 | NC_006146.1 | + | 128517 | 0.69 | 0.52029 |
Target: 5'- gGgUGGCCCuGGGGCgccccucgcccaCCCUGGCgGCg -3' miRNA: 3'- gCgACCGGG-CCUUGaa----------GGGACCGgUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 120284 | 0.7 | 0.486652 |
Target: 5'- aGCUGGUgugcUCGGAGC--CCCUGGUCAa -3' miRNA: 3'- gCGACCG----GGCCUUGaaGGGACCGGUg -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 17128 | 0.71 | 0.399258 |
Target: 5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3' miRNA: 3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 42480 | 0.75 | 0.251534 |
Target: 5'- uGC-GGCCCGGAucaccCUcCCCUGGCCGu -3' miRNA: 3'- gCGaCCGGGCCUu----GAaGGGACCGGUg -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 170165 | 0.68 | 0.59192 |
Target: 5'- gCGCcGGCCgGGGGCUgagggggcUCCCgagggcggGGCCGg -3' miRNA: 3'- -GCGaCCGGgCCUUGA--------AGGGa-------CCGGUg -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 170314 | 0.69 | 0.543214 |
Target: 5'- gGCUGGCgCCGGGccGCgcCCCcGGCCc- -3' miRNA: 3'- gCGACCG-GGCCU--UGaaGGGaCCGGug -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 59149 | 0.7 | 0.468414 |
Target: 5'- uCGCUGGCCCgccucaGGGACgccaCCCagUGuGCCACc -3' miRNA: 3'- -GCGACCGGG------CCUUGaa--GGG--AC-CGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 146529 | 0.75 | 0.245758 |
Target: 5'- gCGCcGcGCCCuGGAGCUggCCCUGcGCCACu -3' miRNA: 3'- -GCGaC-CGGG-CCUUGAa-GGGAC-CGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 169383 | 0.69 | 0.543214 |
Target: 5'- gGCUGGCgCCGGGccGCgcCCCcGGCCc- -3' miRNA: 3'- gCGACCG-GGCCU--UGaaGGGaCCGGug -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 155860 | 0.76 | 0.203441 |
Target: 5'- uCGCaGGCCCGGcggg-CCCUGGCCAg -3' miRNA: 3'- -GCGaCCGGGCCuugaaGGGACCGGUg -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 53370 | 0.7 | 0.486652 |
Target: 5'- gGCUGGCCCGGcGCUugcucgcgUUCCUGccguuaGCCAg -3' miRNA: 3'- gCGACCGGGCCuUGA--------AGGGAC------CGGUg -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 33771 | 0.69 | 0.524085 |
Target: 5'- cCGCUGGUCCGGGuggGCguggUCCgaugGGuCCGCg -3' miRNA: 3'- -GCGACCGGGCCU---UGaa--GGGa---CC-GGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 29440 | 0.71 | 0.399258 |
Target: 5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3' miRNA: 3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 20206 | 0.71 | 0.399258 |
Target: 5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3' miRNA: 3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 33957 | 0.73 | 0.344371 |
Target: 5'- cCGCUGGUCCGGGuggGCguggUCCgCUGGguCCGCu -3' miRNA: 3'- -GCGACCGGGCCU---UGa---AGG-GACC--GGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 58677 | 0.73 | 0.322567 |
Target: 5'- aGCUGuuCCGGGACgagCCCUGGUCGg -3' miRNA: 3'- gCGACcgGGCCUUGaa-GGGACCGGUg -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 47625 | 0.67 | 0.631408 |
Target: 5'- uCGCcgauagGGCCaC-GAGCcgUCUCUGGCCGCg -3' miRNA: 3'- -GCGa-----CCGG-GcCUUGa-AGGGACCGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 33538 | 0.68 | 0.601767 |
Target: 5'- gGUUGuGCCCGG--CUUgCCUGGCCc- -3' miRNA: 3'- gCGAC-CGGGCCuuGAAgGGACCGGug -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 167370 | 0.68 | 0.59192 |
Target: 5'- gCGCcGGCCgGGGGCUgagggggcUCCCgagggcggGGCCGg -3' miRNA: 3'- -GCGaCCGGgCCUUGA--------AGGGa-------CCGGUg -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 137769 | 0.68 | 0.562566 |
Target: 5'- cCGCUGGUCCGGucCgggugggCCUGGuCCGCc -3' miRNA: 3'- -GCGACCGGGCCuuGaag----GGACC-GGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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