miRNA display CGI


Results 21 - 40 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 5' -60.9 NC_006146.1 + 143272 1.08 0.001201
Target:  5'- aCGCUGGCCCGGAACUUCCCUGGCCACc -3'
miRNA:   3'- -GCGACCGGGCCUUGAAGGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 157832 0.68 0.59192
Target:  5'- gCGCUGGCCCcggagGGGACgggcaCCgaGcGCCGCc -3'
miRNA:   3'- -GCGACCGGG-----CCUUGaa---GGgaC-CGGUG- -5'
29121 5' -60.9 NC_006146.1 + 152271 0.68 0.582099
Target:  5'- gGCU-GCCUGGAguGCUcUgCUGGCCACc -3'
miRNA:   3'- gCGAcCGGGCCU--UGAaGgGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 62016 0.69 0.505219
Target:  5'- uCGCUGGCCgCGGcGCUcggCCUcuGCCGCa -3'
miRNA:   3'- -GCGACCGG-GCCuUGAa--GGGacCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 23284 0.71 0.399258
Target:  5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3'
miRNA:   3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 47195 0.68 0.601767
Target:  5'- cCGCc-GCCCcGAGCgccaggcCCCUGGCCGCc -3'
miRNA:   3'- -GCGacCGGGcCUUGaa-----GGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 168302 0.68 0.59192
Target:  5'- gCGCcGGCCgGGGGCUgagggggcUCCCgagggcggGGCCGg -3'
miRNA:   3'- -GCGaCCGGgCCUUGA--------AGGGa-------CCGGUg -5'
29121 5' -60.9 NC_006146.1 + 114556 0.72 0.367216
Target:  5'- gGuCUGGCCCGGGACaaUCUUGGUCAg -3'
miRNA:   3'- gC-GACCGGGCCUUGaaGGGACCGGUg -5'
29121 5' -60.9 NC_006146.1 + 167519 0.69 0.543214
Target:  5'- gGCUGGCgCCGGGccGCgcCCCcGGCCc- -3'
miRNA:   3'- gCGACCG-GGCCU--UGaaGGGaCCGGug -5'
29121 5' -60.9 NC_006146.1 + 128517 0.69 0.52029
Target:  5'- gGgUGGCCCuGGGGCgccccucgcccaCCCUGGCgGCg -3'
miRNA:   3'- gCgACCGGG-CCUUGaa----------GGGACCGgUG- -5'
29121 5' -60.9 NC_006146.1 + 150895 0.73 0.336987
Target:  5'- uGUUGGCCCGGAGgaagccCUUCCC-GGCguCg -3'
miRNA:   3'- gCGACCGGGCCUU------GAAGGGaCCGguG- -5'
29121 5' -60.9 NC_006146.1 + 148152 0.73 0.329719
Target:  5'- uGCUggucagGGCCCGGGuCUUCUCUacGGCCAUg -3'
miRNA:   3'- gCGA------CCGGGCCUuGAAGGGA--CCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 119311 0.67 0.631408
Target:  5'- aCGCUGGCCCcucuGGCUcCCCcgGGCCc- -3'
miRNA:   3'- -GCGACCGGGcc--UUGAaGGGa-CCGGug -5'
29121 5' -60.9 NC_006146.1 + 97257 0.68 0.611635
Target:  5'- aGCUcuaCCGGAGCagUCgCCUGGCCAUc -3'
miRNA:   3'- gCGAccgGGCCUUGa-AG-GGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 137769 0.68 0.562566
Target:  5'- cCGCUGGUCCGGucCgggugggCCUGGuCCGCc -3'
miRNA:   3'- -GCGACCGGGCCuuGaag----GGACC-GGUG- -5'
29121 5' -60.9 NC_006146.1 + 47242 0.71 0.399258
Target:  5'- aGCUGGCgCGGGucgACguggcCCCUGGCC-Cg -3'
miRNA:   3'- gCGACCGgGCCU---UGaa---GGGACCGGuG- -5'
29121 5' -60.9 NC_006146.1 + 26362 0.71 0.399258
Target:  5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3'
miRNA:   3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 58677 0.73 0.322567
Target:  5'- aGCUGuuCCGGGACgagCCCUGGUCGg -3'
miRNA:   3'- gCGACcgGGCCUUGaa-GGGACCGGUg -5'
29121 5' -60.9 NC_006146.1 + 59244 0.69 0.514617
Target:  5'- gGCcuccaugGGCCUGGGugUUCagggCCUGGCCGa -3'
miRNA:   3'- gCGa------CCGGGCCUugAAG----GGACCGGUg -5'
29121 5' -60.9 NC_006146.1 + 168451 0.69 0.543214
Target:  5'- gGCUGGCgCCGGGccGCgcCCCcGGCCc- -3'
miRNA:   3'- gCGACCG-GGCCU--UGaaGGGaCCGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.