miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29122 3' -47.2 NC_006146.1 + 115992 0.66 0.999701
Target:  5'- ---uGCCGGUCCCugaaggccGGCcAGACGGcGCGa -3'
miRNA:   3'- auuuUGGUCAGGG--------UCG-UCUGUUuUGU- -5'
29122 3' -47.2 NC_006146.1 + 50418 0.66 0.999701
Target:  5'- ---cGCCAGggaCGGCAGGCAGGccGCAa -3'
miRNA:   3'- auuuUGGUCaggGUCGUCUGUUU--UGU- -5'
29122 3' -47.2 NC_006146.1 + 61326 0.66 0.999701
Target:  5'- ----cCCGGguggCCUAGCcGGCGAGGCAc -3'
miRNA:   3'- auuuuGGUCa---GGGUCGuCUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 26800 0.66 0.999701
Target:  5'- ---uACCAGUUCUAGCuuAGGCGuugGGGCAg -3'
miRNA:   3'- auuuUGGUCAGGGUCG--UCUGU---UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 41237 0.66 0.999654
Target:  5'- aGAGACCGG-CCCuGCucugguacagaccccAGACGGAGCc -3'
miRNA:   3'- aUUUUGGUCaGGGuCG---------------UCUGUUUUGu -5'
29122 3' -47.2 NC_006146.1 + 31901 0.66 0.99962
Target:  5'- aAAAGCCGGgcUCCCucuagAGCgcaaaaGGGCAAGGCAa -3'
miRNA:   3'- aUUUUGGUC--AGGG-----UCG------UCUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 26934 0.66 0.99962
Target:  5'- aGGAAUCAGUCCCAaaAGAgGGAAgGg -3'
miRNA:   3'- aUUUUGGUCAGGGUcgUCUgUUUUgU- -5'
29122 3' -47.2 NC_006146.1 + 84539 0.66 0.99962
Target:  5'- cAAGACCGG--CCAGCuGACGGAugAc -3'
miRNA:   3'- aUUUUGGUCagGGUCGuCUGUUUugU- -5'
29122 3' -47.2 NC_006146.1 + 65535 0.66 0.99962
Target:  5'- cGAGACCuGguggCCCAGCAacuCAGAGCc -3'
miRNA:   3'- aUUUUGGuCa---GGGUCGUcu-GUUUUGu -5'
29122 3' -47.2 NC_006146.1 + 42292 0.67 0.99952
Target:  5'- gGAGGCCAGguagCCCAGC-GcCAGAAa- -3'
miRNA:   3'- aUUUUGGUCa---GGGUCGuCuGUUUUgu -5'
29122 3' -47.2 NC_006146.1 + 153318 0.67 0.99952
Target:  5'- -cGGGCCAGgucgCCCAGCAuccgauugaucuGGCGGcGCAg -3'
miRNA:   3'- auUUUGGUCa---GGGUCGU------------CUGUUuUGU- -5'
29122 3' -47.2 NC_006146.1 + 92689 0.67 0.99952
Target:  5'- gAAGACCAGUCggagGGCAGugAcAGCGa -3'
miRNA:   3'- aUUUUGGUCAGgg--UCGUCugUuUUGU- -5'
29122 3' -47.2 NC_006146.1 + 158828 0.67 0.99952
Target:  5'- --cGGCCGGggCCCGGCccucGCAAAGCGa -3'
miRNA:   3'- auuUUGGUCa-GGGUCGuc--UGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 74140 0.67 0.99945
Target:  5'- gUGGAACguGUCCuacuCAGCAGGCAccuucaaaccggugcGGGCAa -3'
miRNA:   3'- -AUUUUGguCAGG----GUCGUCUGU---------------UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 128485 0.67 0.999399
Target:  5'- -uAGGCCAGggggCCCacGGCGGGCAcguucagcAGACAc -3'
miRNA:   3'- auUUUGGUCa---GGG--UCGUCUGU--------UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 44933 0.67 0.999399
Target:  5'- cGAGugCGGaCCCAGCaAGACGccAGACc -3'
miRNA:   3'- aUUUugGUCaGGGUCG-UCUGU--UUUGu -5'
29122 3' -47.2 NC_006146.1 + 143588 0.67 0.999252
Target:  5'- gAGGGCCAGUUgaAGCAGGCAu---- -3'
miRNA:   3'- aUUUUGGUCAGggUCGUCUGUuuugu -5'
29122 3' -47.2 NC_006146.1 + 117410 0.67 0.999252
Target:  5'- cAGAGCCAGaccgcaccCCCGGCccugaccGACGAGGCAc -3'
miRNA:   3'- aUUUUGGUCa-------GGGUCGu------CUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 142331 0.67 0.999252
Target:  5'- cGGAGCgAGgCCgGGCAGGCcGGGCAg -3'
miRNA:   3'- aUUUUGgUCaGGgUCGUCUGuUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 157720 0.67 0.999252
Target:  5'- cGGAGCgAGgCCgGGCAGGCcGGGCAg -3'
miRNA:   3'- aUUUUGgUCaGGgUCGUCUGuUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.