miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29122 5' -47.1 NC_006146.1 + 107023 0.66 0.999848
Target:  5'- aGGUG-UUUGUggaaaUGC-UGGGACUGgCAc -3'
miRNA:   3'- -UCACaAAACAa----ACGaACCCUGAC-GUc -5'
29122 5' -47.1 NC_006146.1 + 51467 0.66 0.999848
Target:  5'- aGGUGUggagaUGg--GCg-GGGGCUGCGGc -3'
miRNA:   3'- -UCACAaa---ACaaaCGaaCCCUGACGUC- -5'
29122 5' -47.1 NC_006146.1 + 92931 0.69 0.997854
Target:  5'- uGGUGUgggUUGUgUUGUuuuugguggagUUGGGGCUGCu- -3'
miRNA:   3'- -UCACAa--AACA-AACG-----------AACCCUGACGuc -5'
29122 5' -47.1 NC_006146.1 + 95531 0.69 0.997854
Target:  5'- aGGUGUUggGgcccaGCUUGGGGCaGCGu -3'
miRNA:   3'- -UCACAAaaCaaa--CGAACCCUGaCGUc -5'
29122 5' -47.1 NC_006146.1 + 71755 0.69 0.996368
Target:  5'- gAGUGggacuaaUGgacgcugGCUUGGGGCUGguGg -3'
miRNA:   3'- -UCACaaa----ACaaa----CGAACCCUGACguC- -5'
29122 5' -47.1 NC_006146.1 + 143487 0.7 0.994125
Target:  5'- uGUGUagUGUgUGCcUGGGugUGguGg -3'
miRNA:   3'- uCACAaaACAaACGaACCCugACguC- -5'
29122 5' -47.1 NC_006146.1 + 149643 0.7 0.994125
Target:  5'- uGUGUagUGUgUGCcUGGGugUGguGg -3'
miRNA:   3'- uCACAaaACAaACGaACCCugACguC- -5'
29122 5' -47.1 NC_006146.1 + 152720 0.7 0.994125
Target:  5'- uGUGUagUGUgUGCcUGGGugUGguGg -3'
miRNA:   3'- uCACAaaACAaACGaACCCugACguC- -5'
29122 5' -47.1 NC_006146.1 + 155798 0.7 0.994125
Target:  5'- uGUGUagUGUgUGCcUGGGugUGguGg -3'
miRNA:   3'- uCACAaaACAaACGaACCCugACguC- -5'
29122 5' -47.1 NC_006146.1 + 146565 0.7 0.994125
Target:  5'- uGUGUagUGUgUGCcUGGGugUGguGg -3'
miRNA:   3'- uCACAaaACAaACGaACCCugACguC- -5'
29122 5' -47.1 NC_006146.1 + 27479 0.7 0.993168
Target:  5'- -aUGUUUUGUcUGC-UGGGACUGg-- -3'
miRNA:   3'- ucACAAAACAaACGaACCCUGACguc -5'
29122 5' -47.1 NC_006146.1 + 60604 0.75 0.906051
Target:  5'- cGUGUUUgcc-UGC-UGGGGCUGCGGa -3'
miRNA:   3'- uCACAAAacaaACGaACCCUGACGUC- -5'
29122 5' -47.1 NC_006146.1 + 143458 1.1 0.018107
Target:  5'- gAGUGUUUUGUUUGCUUGGGACUGCAGu -3'
miRNA:   3'- -UCACAAAACAAACGAACCCUGACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.