miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29123 3' -55.1 NC_006146.1 + 109315 0.69 0.863632
Target:  5'- gCGGcCGCUgcaGCCGGCUcuuccucaGCGUGGCc -3'
miRNA:   3'- gGCCaGCGAaugCGGCUGG--------CGCAUUG- -5'
29123 3' -55.1 NC_006146.1 + 34045 0.71 0.7702
Target:  5'- cCCGGg-GCcUAUGCCGGCCGgggguccCGUGGCa -3'
miRNA:   3'- -GGCCagCGaAUGCGGCUGGC-------GCAUUG- -5'
29123 3' -55.1 NC_006146.1 + 62000 0.84 0.200072
Target:  5'- cUCGGUCGCUgcugacuCGCUGGCCGCGgcGCu -3'
miRNA:   3'- -GGCCAGCGAau-----GCGGCUGGCGCauUG- -5'
29123 3' -55.1 NC_006146.1 + 143957 1.11 0.003388
Target:  5'- cCCGGUCGCUUACGCCGACCGCGUAACu -3'
miRNA:   3'- -GGCCAGCGAAUGCGGCUGGCGCAUUG- -5'
29123 3' -55.1 NC_006146.1 + 100797 0.67 0.932259
Target:  5'- gCGGUCuucauCGUgGACUGCGUGGCu -3'
miRNA:   3'- gGCCAGcgaauGCGgCUGGCGCAUUG- -5'
29123 3' -55.1 NC_006146.1 + 67216 0.67 0.927154
Target:  5'- gCCGGUCGCcUG-GCCGGCCa-GgcACa -3'
miRNA:   3'- -GGCCAGCGaAUgCGGCUGGcgCauUG- -5'
29123 3' -55.1 NC_006146.1 + 170146 0.66 0.954349
Target:  5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3'
miRNA:   3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5'
29123 3' -55.1 NC_006146.1 + 167351 0.66 0.954349
Target:  5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3'
miRNA:   3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5'
29123 3' -55.1 NC_006146.1 + 159337 0.66 0.947897
Target:  5'- gCCGG-CGUcucgUGCGCCG-CCuccagcauggcggggGCGUAGCu -3'
miRNA:   3'- -GGCCaGCGa---AUGCGGCuGG---------------CGCAUUG- -5'
29123 3' -55.1 NC_006146.1 + 128799 0.67 0.941778
Target:  5'- cUCGuaGUCGU--GCGCCGuCCGCGaagGACg -3'
miRNA:   3'- -GGC--CAGCGaaUGCGGCuGGCGCa--UUG- -5'
29123 3' -55.1 NC_006146.1 + 112760 0.69 0.878089
Target:  5'- gCCGGUCaaugugacuuGCUUugGCUGugUGCGc--- -3'
miRNA:   3'- -GGCCAG----------CGAAugCGGCugGCGCauug -5'
29123 3' -55.1 NC_006146.1 + 168283 0.66 0.954349
Target:  5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3'
miRNA:   3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5'
29123 3' -55.1 NC_006146.1 + 154648 0.69 0.878089
Target:  5'- uUGGcgCGCUgcCGCCGGCUGCaccgugGUGGCg -3'
miRNA:   3'- gGCCa-GCGAauGCGGCUGGCG------CAUUG- -5'
29123 3' -55.1 NC_006146.1 + 68691 0.66 0.946194
Target:  5'- aCGGaucaccugaagCGCUUugACGCCGuCCGCGUc-- -3'
miRNA:   3'- gGCCa----------GCGAA--UGCGGCuGGCGCAuug -5'
29123 3' -55.1 NC_006146.1 + 169215 0.66 0.954349
Target:  5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3'
miRNA:   3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5'
29123 3' -55.1 NC_006146.1 + 156859 0.68 0.898174
Target:  5'- gCCGG-CGCUUGCGCCugcccCCGCcu-GCu -3'
miRNA:   3'- -GGCCaGCGAAUGCGGcu---GGCGcauUG- -5'
29123 3' -55.1 NC_006146.1 + 6878 0.69 0.856098
Target:  5'- cCCGGU-GCUauuuUugGCCaacaaGGCCGcCGUGACg -3'
miRNA:   3'- -GGCCAgCGA----AugCGG-----CUGGC-GCAUUG- -5'
29123 3' -55.1 NC_006146.1 + 127585 0.7 0.824067
Target:  5'- gCGGcCGaggccGCGCCGGCCGgGUGAg -3'
miRNA:   3'- gGCCaGCgaa--UGCGGCUGGCgCAUUg -5'
29123 3' -55.1 NC_006146.1 + 42324 0.69 0.848368
Target:  5'- gCCGGUCGUaguCGuCCGagGCCGCG-AACu -3'
miRNA:   3'- -GGCCAGCGaauGC-GGC--UGGCGCaUUG- -5'
29123 3' -55.1 NC_006146.1 + 104973 0.69 0.870964
Target:  5'- gCCGGUCGCUgugggGCaaaucaaCCGACCGCc---- -3'
miRNA:   3'- -GGCCAGCGAa----UGc------GGCUGGCGcauug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.