Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 100797 | 0.67 | 0.932259 |
Target: 5'- gCGGUCuucauCGUgGACUGCGUGGCu -3' miRNA: 3'- gGCCAGcgaauGCGgCUGGCGCAUUG- -5' |
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29123 | 3' | -55.1 | NC_006146.1 | + | 71683 | 0.67 | 0.941778 |
Target: 5'- gUGGUCGggcGCGCCGagGCCGCGg--- -3' miRNA: 3'- gGCCAGCgaaUGCGGC--UGGCGCauug -5' |
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29123 | 3' | -55.1 | NC_006146.1 | + | 128799 | 0.67 | 0.941778 |
Target: 5'- cUCGuaGUCGU--GCGCCGuCCGCGaagGACg -3' miRNA: 3'- -GGC--CAGCGaaUGCGGCuGGCGCa--UUG- -5' |
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29123 | 3' | -55.1 | NC_006146.1 | + | 117880 | 0.66 | 0.946194 |
Target: 5'- gCGGcCGCg---GCCaGCCGCGUGAg -3' miRNA: 3'- gGCCaGCGaaugCGGcUGGCGCAUUg -5' |
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29123 | 3' | -55.1 | NC_006146.1 | + | 43749 | 0.66 | 0.946194 |
Target: 5'- gUGGUCGCgcaugACGCCGuccagcuccaCGCGgaGCa -3' miRNA: 3'- gGCCAGCGaa---UGCGGCug--------GCGCauUG- -5' |
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29123 | 3' | -55.1 | NC_006146.1 | + | 68691 | 0.66 | 0.946194 |
Target: 5'- aCGGaucaccugaagCGCUUugACGCCGuCCGCGUc-- -3' miRNA: 3'- gGCCa----------GCGAA--UGCGGCuGGCGCAuug -5' |
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29123 | 3' | -55.1 | NC_006146.1 | + | 159337 | 0.66 | 0.947897 |
Target: 5'- gCCGG-CGUcucgUGCGCCG-CCuccagcauggcggggGCGUAGCu -3' miRNA: 3'- -GGCCaGCGa---AUGCGGCuGG---------------CGCAUUG- -5' |
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29123 | 3' | -55.1 | NC_006146.1 | + | 168283 | 0.66 | 0.954349 |
Target: 5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3' miRNA: 3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5' |
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29123 | 3' | -55.1 | NC_006146.1 | + | 169215 | 0.66 | 0.954349 |
Target: 5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3' miRNA: 3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5' |
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29123 | 3' | -55.1 | NC_006146.1 | + | 170146 | 0.66 | 0.954349 |
Target: 5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3' miRNA: 3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5' |
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29123 | 3' | -55.1 | NC_006146.1 | + | 167351 | 0.66 | 0.954349 |
Target: 5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3' miRNA: 3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5' |
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29123 | 3' | -55.1 | NC_006146.1 | + | 76403 | 0.66 | 0.954349 |
Target: 5'- aCCGGgg----GCGCCGACggcgGCGUGACc -3' miRNA: 3'- -GGCCagcgaaUGCGGCUGg---CGCAUUG- -5' |
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29123 | 3' | -55.1 | NC_006146.1 | + | 15170 | 0.66 | 0.964944 |
Target: 5'- gCCGuGgaagCGCUgaagGCCGACUGCGcGGCc -3' miRNA: 3'- -GGC-Ca---GCGAaug-CGGCUGGCGCaUUG- -5' |
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29123 | 3' | -55.1 | NC_006146.1 | + | 40380 | 0.66 | 0.964944 |
Target: 5'- cCUGGUCGC---CGCCcGgCGCGUAGu -3' miRNA: 3'- -GGCCAGCGaauGCGGcUgGCGCAUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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