Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29123 | 5' | -50.5 | NC_006146.1 | + | 61290 | 0.66 | 0.995601 |
|
Target: 5'- ----gGGGCcUGUCG-CGUGuuuGCGGCg -3' miRNA: 3'- aacaaUCCGcACAGCaGCAUu--CGUCG- -5' |
|||||||
| 29123 | 5' | -50.5 | NC_006146.1 | + | 113494 | 0.66 | 0.995601 |
|
Target: 5'- -cGUagAGGCGUG-CGUCGgccGGGCAcggucGCg -3' miRNA: 3'- aaCAa-UCCGCACaGCAGCa--UUCGU-----CG- -5' |
|||||||
| 29123 | 5' | -50.5 | NC_006146.1 | + | 105785 | 0.67 | 0.990861 |
|
Target: 5'- aUGUggcucgcGGCGUGUagaucgcaGUAGGCAGCa -3' miRNA: 3'- aACAau-----CCGCACAgcag----CAUUCGUCG- -5' |
|||||||
| 29123 | 5' | -50.5 | NC_006146.1 | + | 40056 | 0.67 | 0.988098 |
|
Target: 5'- -----cGGCGUGUC--CGUAGGaCAGCg -3' miRNA: 3'- aacaauCCGCACAGcaGCAUUC-GUCG- -5' |
|||||||
| 29123 | 5' | -50.5 | NC_006146.1 | + | 115176 | 0.67 | 0.988098 |
|
Target: 5'- --cUUGGGCGUGUaCG-CGgaggccAGCGGCg -3' miRNA: 3'- aacAAUCCGCACA-GCaGCau----UCGUCG- -5' |
|||||||
| 29123 | 5' | -50.5 | NC_006146.1 | + | 47700 | 0.68 | 0.982794 |
|
Target: 5'- --cUUGGGCGUGgaaGagGUgggGAGCAGCg -3' miRNA: 3'- aacAAUCCGCACag-CagCA---UUCGUCG- -5' |
|||||||
| 29123 | 5' | -50.5 | NC_006146.1 | + | 139176 | 0.68 | 0.978377 |
|
Target: 5'- cUGUgAGGCGgcUGUUGUUGUcaaagGGGCGGUg -3' miRNA: 3'- aACAaUCCGC--ACAGCAGCA-----UUCGUCG- -5' |
|||||||
| 29123 | 5' | -50.5 | NC_006146.1 | + | 143993 | 1.09 | 0.009262 |
|
Target: 5'- aUUGUUAGGCGUGUCGUCGUAAGCAGCc -3' miRNA: 3'- -AACAAUCCGCACAGCAGCAUUCGUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home