miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29124 3' -56.3 NC_006146.1 + 1627 0.66 0.924542
Target:  5'- --aCCCCGCGcug--GCCCC--CGCCa -3'
miRNA:   3'- agaGGGGUGCaaugaCGGGGuuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 3491 0.66 0.924542
Target:  5'- --aCCCCGCGcug--GCCCC--CGCCa -3'
miRNA:   3'- agaGGGGUGCaaugaCGGGGuuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 80674 0.66 0.919079
Target:  5'- cUCUCCCU-CG--GCUGCCuccuCCAcCGCCu -3'
miRNA:   3'- -AGAGGGGuGCaaUGACGG----GGUuGCGG- -5'
29124 3' -56.3 NC_006146.1 + 109053 0.66 0.915691
Target:  5'- cUCUgCCCCGgGagUcccggcaccagccccACUGCCCCcaccAGCGCCc -3'
miRNA:   3'- -AGA-GGGGUgCa-A---------------UGACGGGG----UUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 33530 0.66 0.913385
Target:  5'- cCUCCCUAgGUUG-UGCCCgGcuUGCCu -3'
miRNA:   3'- aGAGGGGUgCAAUgACGGGgUu-GCGG- -5'
29124 3' -56.3 NC_006146.1 + 167140 0.66 0.913385
Target:  5'- --cCCCCGCGUagaaagugggcACUGUgCCAGgGCCu -3'
miRNA:   3'- agaGGGGUGCAa----------UGACGgGGUUgCGG- -5'
29124 3' -56.3 NC_006146.1 + 95075 0.66 0.913385
Target:  5'- gCUgCCCCugGUgcaUGUCCCGcaGgGCCu -3'
miRNA:   3'- aGA-GGGGugCAaugACGGGGU--UgCGG- -5'
29124 3' -56.3 NC_006146.1 + 75344 0.66 0.913385
Target:  5'- gCUCCguccagguguCCAUGUcauacGCUGCCCCAA-GCUg -3'
miRNA:   3'- aGAGG----------GGUGCAa----UGACGGGGUUgCGG- -5'
29124 3' -56.3 NC_006146.1 + 129413 0.66 0.913385
Target:  5'- -gUCCCCGCGca----CCCCAAgGCCc -3'
miRNA:   3'- agAGGGGUGCaaugacGGGGUUgCGG- -5'
29124 3' -56.3 NC_006146.1 + 43313 0.66 0.913385
Target:  5'- cUCUCaCCCGgcCGgcGCgGCCUCGGcCGCCc -3'
miRNA:   3'- -AGAG-GGGU--GCaaUGaCGGGGUU-GCGG- -5'
29124 3' -56.3 NC_006146.1 + 116105 0.66 0.913385
Target:  5'- cCUCUCCaACGa-GCUGCCCaagGCGCg -3'
miRNA:   3'- aGAGGGG-UGCaaUGACGGGgu-UGCGg -5'
29124 3' -56.3 NC_006146.1 + 121328 0.66 0.907461
Target:  5'- --gCCCCACccug--GCCUCAGCGCUg -3'
miRNA:   3'- agaGGGGUGcaaugaCGGGGUUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 8935 0.66 0.907461
Target:  5'- gUCU-CCCACGggGCguUGCCCgAAagggaaGCCg -3'
miRNA:   3'- -AGAgGGGUGCaaUG--ACGGGgUUg-----CGG- -5'
29124 3' -56.3 NC_006146.1 + 119902 0.66 0.907461
Target:  5'- uUCUCCCCcCGUgGC-GCCCUcuUGCg -3'
miRNA:   3'- -AGAGGGGuGCAaUGaCGGGGuuGCGg -5'
29124 3' -56.3 NC_006146.1 + 215 0.66 0.907461
Target:  5'- --cCCCCGCG--ACgGuCCCCGggGCGCCc -3'
miRNA:   3'- agaGGGGUGCaaUGaC-GGGGU--UGCGG- -5'
29124 3' -56.3 NC_006146.1 + 110141 0.66 0.901933
Target:  5'- uUUUCCCUuugcuccuGCGUgucuugGCggaucucuguccaggGCCUCAGCGCCg -3'
miRNA:   3'- -AGAGGGG--------UGCAa-----UGa--------------CGGGGUUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 48750 0.66 0.901308
Target:  5'- uUCUCCUUGCGcccg-GCCuCCAGCaGCCg -3'
miRNA:   3'- -AGAGGGGUGCaaugaCGG-GGUUG-CGG- -5'
29124 3' -56.3 NC_006146.1 + 114270 0.66 0.901308
Target:  5'- --aCCCCugGaccuucaugGCUGCCaCUaugGACGCCg -3'
miRNA:   3'- agaGGGGugCaa-------UGACGG-GG---UUGCGG- -5'
29124 3' -56.3 NC_006146.1 + 9068 0.66 0.901308
Target:  5'- gUCU-CCCACGggGCgUGgCCCAAaaggaaaGCCg -3'
miRNA:   3'- -AGAgGGGUGCaaUG-ACgGGGUUg------CGG- -5'
29124 3' -56.3 NC_006146.1 + 1380 0.67 0.894929
Target:  5'- gUUCUgCAUGUUGCUGCUCaucguUGCCg -3'
miRNA:   3'- aGAGGgGUGCAAUGACGGGguu--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.