miRNA display CGI


Results 21 - 40 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29124 5' -58.9 NC_006146.1 + 18865 0.66 0.786756
Target:  5'- --aGUAgaGGC-CCGCGGCCauUGGGGCc -3'
miRNA:   3'- gacCAUgaCCGcGGCGUUGG--ACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 15787 0.66 0.786756
Target:  5'- --aGUAgaGGC-CCGCGGCCauUGGGGCc -3'
miRNA:   3'- gacCAUgaCCGcGGCGUUGG--ACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 72361 0.66 0.786756
Target:  5'- cCUGGaccgGCUGGCGgCGacgaAACCcgagucgggUGGGGCc -3'
miRNA:   3'- -GACCa---UGACCGCgGCg---UUGG---------ACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 14842 0.66 0.786756
Target:  5'- -cGGgcCcGGgGCCGCGggagGCCgagGGGGCa -3'
miRNA:   3'- gaCCauGaCCgCGGCGU----UGGa--CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 28098 0.66 0.786756
Target:  5'- --aGUAgaGGC-CCGCGGCCauUGGGGCc -3'
miRNA:   3'- gacCAUgaCCGcGGCGUUGG--ACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 102857 0.66 0.777699
Target:  5'- gUGGaGCUGcucacacugaGCGCCaagaaGCAGCCgcaggGGGACg -3'
miRNA:   3'- gACCaUGAC----------CGCGG-----CGUUGGa----CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 2466 0.66 0.777699
Target:  5'- gUGGgucuUUGGCGgUGUGGCCggcgGGGGCa -3'
miRNA:   3'- gACCau--GACCGCgGCGUUGGa---CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 109487 0.67 0.768518
Target:  5'- --cGUGCccgcguUGGCcaCCGCAgccaGCCUGGGACa -3'
miRNA:   3'- gacCAUG------ACCGc-GGCGU----UGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 131575 0.67 0.759219
Target:  5'- uUGGUgACUGGUGCuUGUGGCg-GGGACu -3'
miRNA:   3'- gACCA-UGACCGCG-GCGUUGgaCCCUG- -5'
29124 5' -58.9 NC_006146.1 + 146851 0.67 0.758283
Target:  5'- -cGGgcCUGGCucgggGCCGCGucaccccGCCaggGGGACg -3'
miRNA:   3'- gaCCauGACCG-----CGGCGU-------UGGa--CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 14552 0.67 0.749812
Target:  5'- cCUGGagcUGCUGG-GCCGCuuUC-GGGGCg -3'
miRNA:   3'- -GACC---AUGACCgCGGCGuuGGaCCCUG- -5'
29124 5' -58.9 NC_006146.1 + 127493 0.67 0.749812
Target:  5'- -aGGagACggcgGGgGUCGCAGCC-GGGGCa -3'
miRNA:   3'- gaCCa-UGa---CCgCGGCGUUGGaCCCUG- -5'
29124 5' -58.9 NC_006146.1 + 148599 0.67 0.740306
Target:  5'- uCUGGgggACUGaGgGCgGCcGCCUuGGGGCc -3'
miRNA:   3'- -GACCa--UGAC-CgCGgCGuUGGA-CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 53017 0.67 0.740306
Target:  5'- cCUGGgccucacgcgGCUGGCcgcgGCCGCcGCCgagagguaaggGGGGCg -3'
miRNA:   3'- -GACCa---------UGACCG----CGGCGuUGGa----------CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 142443 0.67 0.740306
Target:  5'- uCUGGgggACUGaGgGCgGCcGCCUuGGGGCc -3'
miRNA:   3'- -GACCa--UGAC-CgCGgCGuUGGA-CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 145521 0.67 0.740306
Target:  5'- uCUGGgggACUGaGgGCgGCcGCCUuGGGGCc -3'
miRNA:   3'- -GACCa--UGAC-CgCGgCGuUGGA-CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 157832 0.67 0.740306
Target:  5'- uCUGGgggACUGaGgGCgGCcGCCUuGGGGCc -3'
miRNA:   3'- -GACCa--UGAC-CgCGgCGuUGGA-CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 154754 0.67 0.740306
Target:  5'- uCUGGgggACUGaGgGCgGCcGCCUuGGGGCc -3'
miRNA:   3'- -GACCa--UGAC-CgCGgCGuUGGA-CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 151677 0.67 0.740306
Target:  5'- uCUGGgggACUGaGgGCgGCGcCUUGGGGCc -3'
miRNA:   3'- -GACCa--UGAC-CgCGgCGUuGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 76938 0.67 0.730709
Target:  5'- -gGGUgaACUGcCGCUGgAggucGCCUGGGACg -3'
miRNA:   3'- gaCCA--UGACcGCGGCgU----UGGACCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.