Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29125 | 3' | -53.9 | NC_006146.1 | + | 44751 | 0.71 | 0.763339 |
Target: 5'- -gGGCgGCUGUGGUUGUCgggGCCcggcGGGc -3' miRNA: 3'- gaUUG-CGACACCGACAGaa-CGGa---CCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 112394 | 0.66 | 0.971076 |
Target: 5'- -gGACGCcGcaggGGCUGcCgUGCCUGuGGa -3' miRNA: 3'- gaUUGCGaCa---CCGACaGaACGGAC-CC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 65468 | 0.66 | 0.964562 |
Target: 5'- --cACGCUGgcgGGCUGUgCgggUGCUgagcuggccggcgUGGGg -3' miRNA: 3'- gauUGCGACa--CCGACA-Ga--ACGG-------------ACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 1709 | 0.66 | 0.961478 |
Target: 5'- ---cUGCUGUuucuGCUGUCUccGCCUGGa -3' miRNA: 3'- gauuGCGACAc---CGACAGAa-CGGACCc -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 25186 | 0.68 | 0.908401 |
Target: 5'- -gGugGCUGggcaGGCcggGUCUcggGUCUGGGg -3' miRNA: 3'- gaUugCGACa---CCGa--CAGAa--CGGACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 22108 | 0.68 | 0.908401 |
Target: 5'- -gGugGCUGggcaGGCcggGUCUcggGUCUGGGg -3' miRNA: 3'- gaUugCGACa---CCGa--CAGAa--CGGACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 142139 | 0.66 | 0.971076 |
Target: 5'- --uAUGCUcccaGUGGCUGUUgcgugGCCcuuUGGGg -3' miRNA: 3'- gauUGCGA----CACCGACAGaa---CGG---ACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 72565 | 0.66 | 0.971076 |
Target: 5'- -gGGCGCcggcGUGGUgcUGgggCUUGCCgGGGu -3' miRNA: 3'- gaUUGCGa---CACCG--ACa--GAACGGaCCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 28264 | 0.68 | 0.908401 |
Target: 5'- -gGugGCUGggcaGGCcggGUCUcggGUCUGGGg -3' miRNA: 3'- gaUugCGACa---CCGa--CAGAa--CGGACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 19030 | 0.68 | 0.908401 |
Target: 5'- -gGugGCUGggcaGGCcggGUCUcggGUCUGGGg -3' miRNA: 3'- gaUugCGACa---CCGa--CAGAa--CGGACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 15953 | 0.69 | 0.867256 |
Target: 5'- -gGugGCUGggcaGGCcgGUCUcggGUCUGGGg -3' miRNA: 3'- gaUugCGACa---CCGa-CAGAa--CGGACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 12875 | 0.68 | 0.908401 |
Target: 5'- -gGugGCUGggcaGGCcggGUCUcggGUCUGGGg -3' miRNA: 3'- gaUugCGACa---CCGa--CAGAa--CGGACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 55812 | 0.66 | 0.971076 |
Target: 5'- -gGGCGgUGgaagaGGCcGUCccgGCCUGGGu -3' miRNA: 3'- gaUUGCgACa----CCGaCAGaa-CGGACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 144373 | 1.1 | 0.004038 |
Target: 5'- gCUAACGCUGUGGCUGUCUUGCCUGGGu -3' miRNA: 3'- -GAUUGCGACACCGACAGAACGGACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 155790 | 0.7 | 0.843705 |
Target: 5'- -gGugGCUGUGuGUagUGUg-UGCCUGGGu -3' miRNA: 3'- gaUugCGACAC-CG--ACAgaACGGACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 12311 | 0.69 | 0.874682 |
Target: 5'- ---cUGCUGgagcGGCUGUCUcGgCUGGGc -3' miRNA: 3'- gauuGCGACa---CCGACAGAaCgGACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 88258 | 0.67 | 0.933134 |
Target: 5'- ----gGCUGUGGUuguaaaggauggguaUGUgCUgGCCUGGGa -3' miRNA: 3'- gauugCGACACCG---------------ACA-GAaCGGACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 26482 | 0.67 | 0.935646 |
Target: 5'- uUGGCGUgucuggugagaugUGUGGg---CUUGCCUGGGa -3' miRNA: 3'- gAUUGCG-------------ACACCgacaGAACGGACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 92195 | 0.66 | 0.971076 |
Target: 5'- gCUGcUGCUGgggGGCgGgcccgGCCUGGGg -3' miRNA: 3'- -GAUuGCGACa--CCGaCagaa-CGGACCC- -5' |
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29125 | 3' | -53.9 | NC_006146.1 | + | 92016 | 0.66 | 0.971076 |
Target: 5'- gCUGcUGCUGgggGGCgGgcccgGCCUGGGg -3' miRNA: 3'- -GAUuGCGACa--CCGaCagaa-CGGACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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