miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29125 3' -53.9 NC_006146.1 + 25186 0.68 0.908401
Target:  5'- -gGugGCUGggcaGGCcggGUCUcggGUCUGGGg -3'
miRNA:   3'- gaUugCGACa---CCGa--CAGAa--CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 12875 0.68 0.908401
Target:  5'- -gGugGCUGggcaGGCcggGUCUcggGUCUGGGg -3'
miRNA:   3'- gaUugCGACa---CCGa--CAGAa--CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 19030 0.68 0.908401
Target:  5'- -gGugGCUGggcaGGCcggGUCUcggGUCUGGGg -3'
miRNA:   3'- gaUugCGACa---CCGa--CAGAa--CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 22108 0.68 0.908401
Target:  5'- -gGugGCUGggcaGGCcggGUCUcggGUCUGGGg -3'
miRNA:   3'- gaUugCGACa---CCGa--CAGAa--CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 12311 0.69 0.874682
Target:  5'- ---cUGCUGgagcGGCUGUCUcGgCUGGGc -3'
miRNA:   3'- gauuGCGACa---CCGACAGAaCgGACCC- -5'
29125 3' -53.9 NC_006146.1 + 15953 0.69 0.867256
Target:  5'- -gGugGCUGggcaGGCcgGUCUcggGUCUGGGg -3'
miRNA:   3'- gaUugCGACa---CCGa-CAGAa--CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 146557 0.7 0.843705
Target:  5'- -gGugGCUGUGuGUagUGUg-UGCCUGGGu -3'
miRNA:   3'- gaUugCGACAC-CG--ACAgaACGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 143479 0.7 0.843705
Target:  5'- -gGugGCUGUGuGUagUGUg-UGCCUGGGu -3'
miRNA:   3'- gaUugCGACAC-CG--ACAgaACGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 149635 0.7 0.843705
Target:  5'- -gGugGCUGUGuGUagUGUg-UGCCUGGGu -3'
miRNA:   3'- gaUugCGACAC-CG--ACAgaACGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 152712 0.7 0.843705
Target:  5'- -gGugGCUGUGuGUagUGUg-UGCCUGGGu -3'
miRNA:   3'- gaUugCGACAC-CG--ACAgaACGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 155790 0.7 0.843705
Target:  5'- -gGugGCUGUGuGUagUGUg-UGCCUGGGu -3'
miRNA:   3'- gaUugCGACAC-CG--ACAgaACGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 92246 0.7 0.821862
Target:  5'- -cGGC-CUGUGGCUGcugCUggggggcgggcccgGCCUGGGg -3'
miRNA:   3'- gaUUGcGACACCGACa--GAa-------------CGGACCC- -5'
29125 3' -53.9 NC_006146.1 + 44751 0.71 0.763339
Target:  5'- -gGGCgGCUGUGGUUGUCgggGCCcggcGGGc -3'
miRNA:   3'- gaUUG-CGACACCGACAGaa-CGGa---CCC- -5'
29125 3' -53.9 NC_006146.1 + 144373 1.1 0.004038
Target:  5'- gCUAACGCUGUGGCUGUCUUGCCUGGGu -3'
miRNA:   3'- -GAUUGCGACACCGACAGAACGGACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.