miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29125 5' -56.2 NC_006146.1 + 61405 0.67 0.834379
Target:  5'- uGUCCCAGGCuggcugcgguGGCCaACGCGgg-CACg -3'
miRNA:   3'- -CAGGGUCCGu---------UCGGgUGUGUagaGUG- -5'
29125 5' -56.2 NC_006146.1 + 55254 0.67 0.84344
Target:  5'- -gCCCGGGC-GGCCCGgGCGaagcggcucguggggCUCGCg -3'
miRNA:   3'- caGGGUCCGuUCGGGUgUGUa--------------GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 58503 0.67 0.842625
Target:  5'- aUCCaCAGGCAcggcAGCCCcuGCGgCGUC-CACa -3'
miRNA:   3'- cAGG-GUCCGU----UCGGG--UGU-GUAGaGUG- -5'
29125 5' -56.2 NC_006146.1 + 22757 0.67 0.841809
Target:  5'- -aCCCGGGCccugaccagcacgAAGCCCAUGCGg--CACu -3'
miRNA:   3'- caGGGUCCG-------------UUCGGGUGUGUagaGUG- -5'
29125 5' -56.2 NC_006146.1 + 4254 0.67 0.858531
Target:  5'- uUCCC-GGCucGCUCugGCGUC-CGCg -3'
miRNA:   3'- cAGGGuCCGuuCGGGugUGUAGaGUG- -5'
29125 5' -56.2 NC_006146.1 + 78463 0.67 0.866176
Target:  5'- -cCCCAGGCGGGCCaccuUugAUGUCUUggGCu -3'
miRNA:   3'- caGGGUCCGUUCGG----GugUGUAGAG--UG- -5'
29125 5' -56.2 NC_006146.1 + 27421 0.67 0.825945
Target:  5'- -aCCCAGGCAcacacuacacacAG-CCACcCAUCUCAg -3'
miRNA:   3'- caGGGUCCGU------------UCgGGUGuGUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 117952 0.68 0.817333
Target:  5'- uUCUCcGGCGAGUCCACGaucCUCGCc -3'
miRNA:   3'- cAGGGuCCGUUCGGGUGUguaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 12318 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 48878 0.68 0.78959
Target:  5'- -cUCCAGGCGccaGGCCUGCGCcucuucuGUCUCAg -3'
miRNA:   3'- caGGGUCCGU---UCGGGUGUG-------UAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 56356 0.68 0.817333
Target:  5'- uGUCCCGGGCcAGaCCUACGCca-UCAa -3'
miRNA:   3'- -CAGGGUCCGuUC-GGGUGUGuagAGUg -5'
29125 5' -56.2 NC_006146.1 + 3211 0.68 0.799606
Target:  5'- -cCCCGGGgAAGCCC-C-CcgCUCGCc -3'
miRNA:   3'- caGGGUCCgUUCGGGuGuGuaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 18475 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 2279 0.68 0.799606
Target:  5'- -cCCCGGGgAAGCCC-C-CcgCUCGCc -3'
miRNA:   3'- caGGGUCCgUUCGGGuGuGuaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 1347 0.68 0.799606
Target:  5'- -cCCCGGGgAAGCCC-C-CcgCUCGCc -3'
miRNA:   3'- caGGGUCCgUUCGGGuGuGuaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 118575 0.68 0.790508
Target:  5'- -cCCCGGGCAccccGGCCCACGuCAgggUCagCACc -3'
miRNA:   3'- caGGGUCCGU----UCGGGUGU-GU---AGa-GUG- -5'
29125 5' -56.2 NC_006146.1 + 21553 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 102062 0.68 0.781265
Target:  5'- uGUCCagcaGGGCcuuGAGCCCGCucucgucCAUCUCGa -3'
miRNA:   3'- -CAGGg---UCCG---UUCGGGUGu------GUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 24631 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 27709 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.