miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29125 5' -56.2 NC_006146.1 + 55183 0.67 0.834379
Target:  5'- cGUCCCAGGCugcGgCCGCggcgggcgaGCGUCUCc- -3'
miRNA:   3'- -CAGGGUCCGuu-CgGGUG---------UGUAGAGug -5'
29125 5' -56.2 NC_006146.1 + 24343 0.67 0.825945
Target:  5'- -aCCCAGGCAcacacuacacacAG-CCACcCAUCUCAg -3'
miRNA:   3'- caGGGUCCGU------------UCgGGUGuGUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 27421 0.67 0.825945
Target:  5'- -aCCCAGGCAcacacuacacacAG-CCACcCAUCUCAg -3'
miRNA:   3'- caGGGUCCGU------------UCgGGUGuGUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 21265 0.67 0.825945
Target:  5'- -aCCCAGGCAcacacuacacacAG-CCACcCAUCUCAg -3'
miRNA:   3'- caGGGUCCGU------------UCgGGUGuGUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 18187 0.67 0.825945
Target:  5'- -aCCCAGGCAcacacuacacacAG-CCACcCAUCUCAg -3'
miRNA:   3'- caGGGUCCGU------------UCgGGUGuGUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 15109 0.67 0.825945
Target:  5'- -aCCCAGGCAcacacuacacacAG-CCACcCAUCUCAg -3'
miRNA:   3'- caGGGUCCGU------------UCgGGUGuGUAGAGUg -5'
29125 5' -56.2 NC_006146.1 + 94908 0.67 0.825945
Target:  5'- uGUCUgggUGGGCGAGCCCACGCAg----- -3'
miRNA:   3'- -CAGG---GUCCGUUCGGGUGUGUagagug -5'
29125 5' -56.2 NC_006146.1 + 117952 0.68 0.817333
Target:  5'- uUCUCcGGCGAGUCCACGaucCUCGCc -3'
miRNA:   3'- cAGGGuCCGUUCGGGUGUguaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 56356 0.68 0.817333
Target:  5'- uGUCCCGGGCcAGaCCUACGCca-UCAa -3'
miRNA:   3'- -CAGGGUCCGuUC-GGGUGUGuagAGUg -5'
29125 5' -56.2 NC_006146.1 + 7159 0.68 0.808551
Target:  5'- -cCCCAcuaAGGCCCACACAcCUUACa -3'
miRNA:   3'- caGGGUccgUUCGGGUGUGUaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 1347 0.68 0.799606
Target:  5'- -cCCCGGGgAAGCCC-C-CcgCUCGCc -3'
miRNA:   3'- caGGGUCCgUUCGGGuGuGuaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 2279 0.68 0.799606
Target:  5'- -cCCCGGGgAAGCCC-C-CcgCUCGCc -3'
miRNA:   3'- caGGGUCCgUUCGGGuGuGuaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 3211 0.68 0.799606
Target:  5'- -cCCCGGGgAAGCCC-C-CcgCUCGCc -3'
miRNA:   3'- caGGGUCCgUUCGGGuGuGuaGAGUG- -5'
29125 5' -56.2 NC_006146.1 + 27709 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 18475 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 118575 0.68 0.790508
Target:  5'- -cCCCGGGCAccccGGCCCACGuCAgggUCagCACc -3'
miRNA:   3'- caGGGUCCGU----UCGGGUGU-GU---AGa-GUG- -5'
29125 5' -56.2 NC_006146.1 + 12318 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 99091 0.68 0.790508
Target:  5'- -cCCgCAGcCAGGUCCGCACGUCcCGCg -3'
miRNA:   3'- caGG-GUCcGUUCGGGUGUGUAGaGUG- -5'
29125 5' -56.2 NC_006146.1 + 21553 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5'
29125 5' -56.2 NC_006146.1 + 24631 0.68 0.790508
Target:  5'- -aCCCGGGCuucAGGCCCGCcuCAgucccCUCGCc -3'
miRNA:   3'- caGGGUCCG---UUCGGGUGu-GUa----GAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.