miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 3' -64.8 NC_006146.1 + 126531 0.66 0.537537
Target:  5'- cGCCCCCcgGGCgGGGGUCugGca-CCUc -3'
miRNA:   3'- -CGGGGG--CCGgUCCCAGugCuccGGAc -5'
29126 3' -64.8 NC_006146.1 + 82492 0.66 0.537537
Target:  5'- cCCCCCGGCacaAGccauaggccguGGUCA--GGGCCUGc -3'
miRNA:   3'- cGGGGGCCGg--UC-----------CCAGUgcUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 123505 0.66 0.541254
Target:  5'- uGgCCCUGGCCAcggucgaccccaggcGGGUCGCGGguGGCa-- -3'
miRNA:   3'- -CgGGGGCCGGU---------------CCCAGUGCU--CCGgac -5'
29126 3' -64.8 NC_006146.1 + 165642 0.66 0.544047
Target:  5'- aCCCCCGGCUcgggcguuGGGUCcGugaccccacagcccCGAGGCCg- -3'
miRNA:   3'- cGGGGGCCGGu-------CCCAG-U--------------GCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 115915 0.66 0.546846
Target:  5'- gGCUUCCGGCCAccccGGG-UACGGGGgCa- -3'
miRNA:   3'- -CGGGGGCCGGU----CCCaGUGCUCCgGac -5'
29126 3' -64.8 NC_006146.1 + 98315 0.67 0.509959
Target:  5'- uGCUCCgUGGCCGucuGG-CACGGGGCCg- -3'
miRNA:   3'- -CGGGG-GCCGGUc--CCaGUGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 38453 0.67 0.474155
Target:  5'- uCCCCUGccuCCGGGGUgACGGGuGCCa- -3'
miRNA:   3'- cGGGGGCc--GGUCCCAgUGCUC-CGGac -5'
29126 3' -64.8 NC_006146.1 + 150949 0.67 0.50905
Target:  5'- cGCCCCCGGCCcuGaUCuugcccaGgGAGGCCg- -3'
miRNA:   3'- -CGGGGGCCGGucCcAG-------UgCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 55362 0.67 0.499995
Target:  5'- aGCCCCCgccaccgcgcgcgGGacgcCCGGGG-CAcCGAGGCCa- -3'
miRNA:   3'- -CGGGGG-------------CC----GGUCCCaGU-GCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 52085 0.67 0.491907
Target:  5'- gGgCUgCGGUCGGGGgccgGCGAGGCCa- -3'
miRNA:   3'- -CgGGgGCCGGUCCCag--UGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 130949 0.67 0.482991
Target:  5'- uUCCCCaGCCgugucaucAGGGUCAgGAGGCg-- -3'
miRNA:   3'- cGGGGGcCGG--------UCCCAGUgCUCCGgac -5'
29126 3' -64.8 NC_006146.1 + 5174 0.67 0.482991
Target:  5'- aGUUCCUGGCCAGGcccGagACGuuuucccuGGGCCUGg -3'
miRNA:   3'- -CGGGGGCCGGUCC---CagUGC--------UCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 96943 0.67 0.477679
Target:  5'- cUCCCCGuccgcgagucugggcGCCAGGGUguCGGGGCa-- -3'
miRNA:   3'- cGGGGGC---------------CGGUCCCAguGCUCCGgac -5'
29126 3' -64.8 NC_006146.1 + 108064 0.67 0.474155
Target:  5'- aCCUCCGGCCu-GGcCACGGcGGCCa- -3'
miRNA:   3'- cGGGGGCCGGucCCaGUGCU-CCGGac -5'
29126 3' -64.8 NC_006146.1 + 168537 0.67 0.468891
Target:  5'- uCCCCUgggGGCCucgggggcggaggggGGGGUCccGCGGGGCCc- -3'
miRNA:   3'- cGGGGG---CCGG---------------UCCCAG--UGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 100278 0.67 0.4654
Target:  5'- aGCCUCCuaGCgGGGG-CugGcAGGCCUGc -3'
miRNA:   3'- -CGGGGGc-CGgUCCCaGugC-UCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 67772 0.67 0.4654
Target:  5'- uCCCCCagcucGGCCAGGGacgUgACGGcGGCCa- -3'
miRNA:   3'- cGGGGG-----CCGGUCCC---AgUGCU-CCGGac -5'
29126 3' -64.8 NC_006146.1 + 167605 0.67 0.468891
Target:  5'- uCCCCUgggGGCCucgggggcggaggggGGGGUCccGCGGGGCCc- -3'
miRNA:   3'- cGGGGG---CCGG---------------UCCCAG--UGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 170400 0.67 0.468891
Target:  5'- uCCCCUgggGGCCucgggggcggaggggGGGGUCccGCGGGGCCc- -3'
miRNA:   3'- cGGGGG---CCGG---------------UCCCAG--UGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 79308 0.67 0.474155
Target:  5'- uGCUCuaGGCCAGGGagaauUCACGAccgaagauggGGCCa- -3'
miRNA:   3'- -CGGGggCCGGUCCC-----AGUGCU----------CCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.