miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 5' -55.6 NC_006146.1 + 92084 0.67 0.909844
Target:  5'- --uGGggGGCGGCCCggCCUggggcugcugcugggGGGCGGg -3'
miRNA:   3'- cagUCuuUUGUUGGGa-GGG---------------CCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 162315 0.67 0.907416
Target:  5'- cUCAGAGAGCAuuucuGCCUggugcugcagCCCGGGCu-- -3'
miRNA:   3'- cAGUCUUUUGU-----UGGGa---------GGGCCCGcca -5'
29126 5' -55.6 NC_006146.1 + 46755 0.67 0.901181
Target:  5'- -cCAGGGuccucGCcuCCCgacCCCGGGCGGa -3'
miRNA:   3'- caGUCUUu----UGuuGGGa--GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 164031 0.67 0.901181
Target:  5'- gGUCAGAuaagguGAAUAGCUaaacaaUCCCGGG-GGUg -3'
miRNA:   3'- -CAGUCU------UUUGUUGGg-----AGGGCCCgCCA- -5'
29126 5' -55.6 NC_006146.1 + 60400 0.67 0.888018
Target:  5'- --uGGAGAACAucugcACCCUCCUggaccuggccgGGGUGGa -3'
miRNA:   3'- cagUCUUUUGU-----UGGGAGGG-----------CCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 108389 0.67 0.873957
Target:  5'- -aCAGAAcacGCAGCCC-CCCaGGGCcaGGUg -3'
miRNA:   3'- caGUCUUu--UGUUGGGaGGG-CCCG--CCA- -5'
29126 5' -55.6 NC_006146.1 + 129483 0.68 0.8666
Target:  5'- -cUAGAAAACucggguGCCC-CCCaGGCGGa -3'
miRNA:   3'- caGUCUUUUGu-----UGGGaGGGcCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 55811 0.68 0.8666
Target:  5'- gGUCAauGAGuACAGCCagcgCCUGGGUGGg -3'
miRNA:   3'- -CAGU--CUUuUGUUGGga--GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 7079 0.68 0.859033
Target:  5'- aGUCAGGAuuCuccACCCUCCCuGGCa-- -3'
miRNA:   3'- -CAGUCUUuuGu--UGGGAGGGcCCGcca -5'
29126 5' -55.6 NC_006146.1 + 154710 0.68 0.859033
Target:  5'- -cCAGAu-GCAGCCCaCCaGGGCGGc -3'
miRNA:   3'- caGUCUuuUGUUGGGaGGgCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 56967 0.68 0.859033
Target:  5'- -gCAGA--GCGACCCguUCUCGGGCGu- -3'
miRNA:   3'- caGUCUuuUGUUGGG--AGGGCCCGCca -5'
29126 5' -55.6 NC_006146.1 + 92520 0.68 0.851262
Target:  5'- aUCAGAGGACGaggaggACaCCUCCCuGGGCa-- -3'
miRNA:   3'- cAGUCUUUUGU------UG-GGAGGG-CCCGcca -5'
29126 5' -55.6 NC_006146.1 + 90528 0.69 0.826789
Target:  5'- --uGGugauGAACAA-CCUCCCGGaGCGGUg -3'
miRNA:   3'- cagUCu---UUUGUUgGGAGGGCC-CGCCA- -5'
29126 5' -55.6 NC_006146.1 + 126505 0.69 0.813075
Target:  5'- --aGGAAGGCGccguGCCCggccccacacgcccCCCGGGCGGg -3'
miRNA:   3'- cagUCUUUUGU----UGGGa-------------GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 122505 0.69 0.79173
Target:  5'- gGUCgAGAGAAUggaGGCCgCggagCCCGGGUGGUu -3'
miRNA:   3'- -CAG-UCUUUUG---UUGG-Ga---GGGCCCGCCA- -5'
29126 5' -55.6 NC_006146.1 + 127163 0.69 0.79173
Target:  5'- cGUCAugc-GCGACCaccuggCCCGGGCGGa -3'
miRNA:   3'- -CAGUcuuuUGUUGGga----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 30927 0.69 0.782585
Target:  5'- -cCAGggGGgAGCCCguuUCgUGGGCGGUu -3'
miRNA:   3'- caGUCuuUUgUUGGG---AGgGCCCGCCA- -5'
29126 5' -55.6 NC_006146.1 + 129372 0.7 0.773306
Target:  5'- cUCAGGAGG-AGCCCgcggaUCCCGGGCGu- -3'
miRNA:   3'- cAGUCUUUUgUUGGG-----AGGGCCCGCca -5'
29126 5' -55.6 NC_006146.1 + 64222 0.7 0.772371
Target:  5'- -gCAGGAGGCAcaucugcGCCUgggCCgGGGCGGg -3'
miRNA:   3'- caGUCUUUUGU-------UGGGa--GGgCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 124772 0.7 0.75438
Target:  5'- aUCAGAGcACGGCCagggCCCGGGCa-- -3'
miRNA:   3'- cAGUCUUuUGUUGGga--GGGCCCGcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.