miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29127 5' -62.3 NC_006146.1 + 113928 0.67 0.617729
Target:  5'- aCCagcaGGuGGCCgucAGGGUcucuuGAGAGUAUGCUg -3'
miRNA:   3'- -GGg---CC-CCGG---UCCCAc----CUCUCGUACGA- -5'
29127 5' -62.3 NC_006146.1 + 169061 0.67 0.617729
Target:  5'- gCCCGGGGuCCcGGG-GGGcGGCGcGCg -3'
miRNA:   3'- -GGGCCCC-GGuCCCaCCUcUCGUaCGa -5'
29127 5' -62.3 NC_006146.1 + 168129 0.67 0.617729
Target:  5'- gCCCGGGGuCCcGGG-GGGcGGCGcGCg -3'
miRNA:   3'- -GGGCCCC-GGuCCCaCCUcUCGUaCGa -5'
29127 5' -62.3 NC_006146.1 + 127083 0.67 0.617729
Target:  5'- gCCGaaaGGGCCAGGGcGGAGcggugggacaGGCAcgcccagaUGCUa -3'
miRNA:   3'- gGGC---CCCGGUCCCaCCUC----------UCGU--------ACGA- -5'
29127 5' -62.3 NC_006146.1 + 152528 0.67 0.617729
Target:  5'- cCCCGGccaccaGGaCCAGGGU---GAGCAUGCc -3'
miRNA:   3'- -GGGCC------CC-GGUCCCAccuCUCGUACGa -5'
29127 5' -62.3 NC_006146.1 + 169993 0.67 0.617729
Target:  5'- gCCCGGGGuCCcGGG-GGGcGGCGcGCg -3'
miRNA:   3'- -GGGCCCC-GGuCCCaCCUcUCGUaCGa -5'
29127 5' -62.3 NC_006146.1 + 167197 0.67 0.617729
Target:  5'- gCCCGGGGuCCcGGG-GGGcGGCGcGCg -3'
miRNA:   3'- -GGGCCCC-GGuCCCaCCUcUCGUaCGa -5'
29127 5' -62.3 NC_006146.1 + 26270 0.67 0.607979
Target:  5'- -aCGGGuggcggaauuaGCCuGGGUGGAgGGGCcgGCa -3'
miRNA:   3'- ggGCCC-----------CGGuCCCACCU-CUCGuaCGa -5'
29127 5' -62.3 NC_006146.1 + 162033 0.67 0.607979
Target:  5'- aCUGGGaGCCuGGGgGcGGGGGCAgGCUg -3'
miRNA:   3'- gGGCCC-CGGuCCCaC-CUCUCGUaCGA- -5'
29127 5' -62.3 NC_006146.1 + 162405 0.67 0.598245
Target:  5'- cCCCGguGGGCCAGgauGGUGGGGAagGUA-GCg -3'
miRNA:   3'- -GGGC--CCCGGUC---CCACCUCU--CGUaCGa -5'
29127 5' -62.3 NC_006146.1 + 51868 0.67 0.592415
Target:  5'- gCCCGGGGaUggggaugaagaggggAGGGUGGAG-GC-UGCg -3'
miRNA:   3'- -GGGCCCCgG---------------UCCCACCUCuCGuACGa -5'
29127 5' -62.3 NC_006146.1 + 33329 0.67 0.588534
Target:  5'- cUCCGGGGUCcGGGUGcuccGGGGCA-GCc -3'
miRNA:   3'- -GGGCCCCGGuCCCACc---UCUCGUaCGa -5'
29127 5' -62.3 NC_006146.1 + 94983 0.67 0.588534
Target:  5'- aCCCacuGGCCAGGcaUGGGGGGCA-GCUg -3'
miRNA:   3'- -GGGcc-CCGGUCCc-ACCUCUCGUaCGA- -5'
29127 5' -62.3 NC_006146.1 + 48578 0.67 0.578852
Target:  5'- aUCCGGGGCCucGGGGgucagGGAGgccagaAGgGUGUUc -3'
miRNA:   3'- -GGGCCCCGG--UCCCa----CCUC------UCgUACGA- -5'
29127 5' -62.3 NC_006146.1 + 33252 0.67 0.569204
Target:  5'- gUCCGccGGGCCGcugccccgcuccGGGUGGGGGGUGgcccgGCUg -3'
miRNA:   3'- -GGGC--CCCGGU------------CCCACCUCUCGUa----CGA- -5'
29127 5' -62.3 NC_006146.1 + 112513 0.67 0.569204
Target:  5'- gUCCaGGGGCC--GGUGGAGGGCcUGg- -3'
miRNA:   3'- -GGG-CCCCGGucCCACCUCUCGuACga -5'
29127 5' -62.3 NC_006146.1 + 137902 0.68 0.559597
Target:  5'- cCCCGuggacaGGGCCGGGGguuccGGGGGCAgccGCg -3'
miRNA:   3'- -GGGC------CCCGGUCCCac---CUCUCGUa--CGa -5'
29127 5' -62.3 NC_006146.1 + 169510 0.68 0.550035
Target:  5'- gCCCGGcgcguGCCGGGGgacccGGGGGCGUGUc -3'
miRNA:   3'- -GGGCCc----CGGUCCCac---CUCUCGUACGa -5'
29127 5' -62.3 NC_006146.1 + 52331 0.68 0.550035
Target:  5'- -aCGuGGGCCGGGGUGcccGGGGCG-GCg -3'
miRNA:   3'- ggGC-CCCGGUCCCACc--UCUCGUaCGa -5'
29127 5' -62.3 NC_006146.1 + 170441 0.68 0.550035
Target:  5'- gCCCGGcgcguGCCGGGGgacccGGGGGCGUGUc -3'
miRNA:   3'- -GGGCCc----CGGUCCCac---CUCUCGUACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.