miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29128 3' -55.5 NC_006146.1 + 42671 0.66 0.924166
Target:  5'- cGGCUC-GC-CCGcGGuGGgcugccugaggcuGGCAGAGCc -3'
miRNA:   3'- -CCGAGuCGaGGCaCCuCU-------------UCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 163193 0.66 0.924166
Target:  5'- uGGCUUGGCUUC-UGccccucaGAGGAGCcGGGCa -3'
miRNA:   3'- -CCGAGUCGAGGcAC-------CUCUUCGuCUCG- -5'
29128 3' -55.5 NC_006146.1 + 154660 0.66 0.919181
Target:  5'- cGC-CGGCUgcaCCGUGGuGgcGgGGGGCg -3'
miRNA:   3'- cCGaGUCGA---GGCACCuCuuCgUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 116679 0.66 0.918615
Target:  5'- aGGCUCuGCUCCcgccccauccuGUacgaugcGGAGAccgGGCAGGuGCa -3'
miRNA:   3'- -CCGAGuCGAGG-----------CA-------CCUCU---UCGUCU-CG- -5'
29128 3' -55.5 NC_006146.1 + 138331 0.66 0.918615
Target:  5'- aGCUaAGgUCCGcgagauuUGGGGuAGCGGAGCc -3'
miRNA:   3'- cCGAgUCgAGGC-------ACCUCuUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 90078 0.66 0.918047
Target:  5'- aGGCggugCAGgggggagcaGUGGAGGcAGCGGAGCa -3'
miRNA:   3'- -CCGa---GUCgagg-----CACCUCU-UCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 129643 0.67 0.913417
Target:  5'- gGGCgcguGCUCCGcccgGGAauGGCgAGAGCg -3'
miRNA:   3'- -CCGagu-CGAGGCa---CCUcuUCG-UCUCG- -5'
29128 3' -55.5 NC_006146.1 + 114791 0.67 0.913417
Target:  5'- cGGCcaccuUCGcCUUCGUGGAGGAGCuGguGGCc -3'
miRNA:   3'- -CCG-----AGUcGAGGCACCUCUUCGuC--UCG- -5'
29128 3' -55.5 NC_006146.1 + 15437 0.67 0.913417
Target:  5'- cGGCUgCAGUcCUGccUGGcGcAGCAGAGCg -3'
miRNA:   3'- -CCGA-GUCGaGGC--ACCuCuUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 11398 0.67 0.913417
Target:  5'- uGGUggAGCUgC-UGGAaAAGCAGAGCc -3'
miRNA:   3'- -CCGagUCGAgGcACCUcUUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 14625 0.67 0.913417
Target:  5'- uGCUgGcGCUgCGUGGGGGAGCucauGGuGCu -3'
miRNA:   3'- cCGAgU-CGAgGCACCUCUUCG----UCuCG- -5'
29128 3' -55.5 NC_006146.1 + 166524 0.67 0.907416
Target:  5'- uGGCgUCGGC-CUGgGGAGcccGCGGGGCc -3'
miRNA:   3'- -CCG-AGUCGaGGCaCCUCuu-CGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 46716 0.67 0.907416
Target:  5'- cGGCcgcggCGGCUCCGaGGc-GGGCGGAGg -3'
miRNA:   3'- -CCGa----GUCGAGGCaCCucUUCGUCUCg -5'
29128 3' -55.5 NC_006146.1 + 165306 0.67 0.907416
Target:  5'- aGGU--GGCggCCGUcGGGuGAGCAGAGCc -3'
miRNA:   3'- -CCGagUCGa-GGCA-CCUcUUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 75684 0.67 0.907416
Target:  5'- cGCUCAacggacGcCUCCcUGGAGGAGCuGcAGCg -3'
miRNA:   3'- cCGAGU------C-GAGGcACCUCUUCGuC-UCG- -5'
29128 3' -55.5 NC_006146.1 + 121457 0.67 0.903703
Target:  5'- uGGCUCgucucauccuGGCUCCcaaucccuauauuuUGGAGggGCAGcugacggugGGCa -3'
miRNA:   3'- -CCGAG----------UCGAGGc-------------ACCUCuuCGUC---------UCG- -5'
29128 3' -55.5 NC_006146.1 + 118433 0.67 0.901181
Target:  5'- cGCUCAGgaCCGUGuuGAuGAGGCcccucuccAGGGCg -3'
miRNA:   3'- cCGAGUCgaGGCAC--CU-CUUCG--------UCUCG- -5'
29128 3' -55.5 NC_006146.1 + 128169 0.67 0.894714
Target:  5'- aGGCgaugCAGCgacgCCG-GGAGGcggcccAGgGGGGCg -3'
miRNA:   3'- -CCGa---GUCGa---GGCaCCUCU------UCgUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 54205 0.67 0.894714
Target:  5'- uGCcCGGuCUCCGcaucguacaggaUGGggcGGGAGCAGAGCc -3'
miRNA:   3'- cCGaGUC-GAGGC------------ACC---UCUUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 109178 0.67 0.894714
Target:  5'- -cCUCAGCcggUCUGUGGccGGggGCauguAGGGCa -3'
miRNA:   3'- ccGAGUCG---AGGCACC--UCuuCG----UCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.