miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29128 5' -60.1 NC_006146.1 + 41533 0.68 0.63515
Target:  5'- gGGAUCCgcggGCuCCUC-CUGAGG-CUGCu -3'
miRNA:   3'- -CCUGGGa---CG-GGAGaGACUCCaGGCGu -5'
29128 5' -60.1 NC_006146.1 + 132857 0.69 0.595696
Target:  5'- uGACUCUGggcuCCCaCUgUGAGGUCUGCAu -3'
miRNA:   3'- cCUGGGAC----GGGaGAgACUCCAGGCGU- -5'
29128 5' -60.1 NC_006146.1 + 56851 0.7 0.546978
Target:  5'- aGACCUggaUGCCCUgUCUGuGGcggaugauuuaUCCGCAu -3'
miRNA:   3'- cCUGGG---ACGGGAgAGACuCC-----------AGGCGU- -5'
29128 5' -60.1 NC_006146.1 + 52429 0.7 0.527829
Target:  5'- uGGCCuCUGCCCUCcagUUUGGGGUCgaCGCc -3'
miRNA:   3'- cCUGG-GACGGGAG---AGACUCCAG--GCGu -5'
29128 5' -60.1 NC_006146.1 + 157803 0.7 0.518347
Target:  5'- cGGACCCcGCCUggCgaccCUGGGGUCUGUc -3'
miRNA:   3'- -CCUGGGaCGGGa-Ga---GACUCCAGGCGu -5'
29128 5' -60.1 NC_006146.1 + 154725 0.7 0.518347
Target:  5'- cGGACCCcGCCUggCgaccCUGGGGUCUGUc -3'
miRNA:   3'- -CCUGGGaCGGGa-Ga---GACUCCAGGCGu -5'
29128 5' -60.1 NC_006146.1 + 151648 0.7 0.518347
Target:  5'- cGGACCCcGCCUggCgaccCUGGGGUCUGUc -3'
miRNA:   3'- -CCUGGGaCGGGa-Ga---GACUCCAGGCGu -5'
29128 5' -60.1 NC_006146.1 + 148570 0.7 0.518347
Target:  5'- cGGACCCcGCCUggCgaccCUGGGGUCUGUc -3'
miRNA:   3'- -CCUGGGaCGGGa-Ga---GACUCCAGGCGu -5'
29128 5' -60.1 NC_006146.1 + 145492 0.7 0.518347
Target:  5'- cGGACCCcGCCUggCgaccCUGGGGUCUGUc -3'
miRNA:   3'- -CCUGGGaCGGGa-Ga---GACUCCAGGCGu -5'
29128 5' -60.1 NC_006146.1 + 142414 0.7 0.518347
Target:  5'- cGGACCCcGCCUggCgaccCUGGGGUCUGUc -3'
miRNA:   3'- -CCUGGGaCGGGa-Ga---GACUCCAGGCGu -5'
29128 5' -60.1 NC_006146.1 + 51997 0.72 0.402665
Target:  5'- uGGACgccaaCCUGCUCUCgaacCUGAGGcagUCCGCGg -3'
miRNA:   3'- -CCUG-----GGACGGGAGa---GACUCC---AGGCGU- -5'
29128 5' -60.1 NC_006146.1 + 32538 0.66 0.7697
Target:  5'- -aACCCUauggagggGaCCCUC-CUGAGGcUCCGCu -3'
miRNA:   3'- ccUGGGA--------C-GGGAGaGACUCC-AGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.