miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29128 5' -60.1 NC_006146.1 + 142586 0.7 0.556636
Target:  5'- cGGAUuggCCUGUUgaUUCUCagguUGAGGUCCGCAu -3'
miRNA:   3'- -CCUG---GGACGG--GAGAG----ACUCCAGGCGU- -5'
29128 5' -60.1 NC_006146.1 + 56851 0.7 0.546978
Target:  5'- aGACCUggaUGCCCUgUCUGuGGcggaugauuuaUCCGCAu -3'
miRNA:   3'- cCUGGG---ACGGGAgAGACuCC-----------AGGCGU- -5'
29128 5' -60.1 NC_006146.1 + 52429 0.7 0.527829
Target:  5'- uGGCCuCUGCCCUCcagUUUGGGGUCgaCGCc -3'
miRNA:   3'- cCUGG-GACGGGAG---AGACUCCAG--GCGu -5'
29128 5' -60.1 NC_006146.1 + 148570 0.7 0.518347
Target:  5'- cGGACCCcGCCUggCgaccCUGGGGUCUGUc -3'
miRNA:   3'- -CCUGGGaCGGGa-Ga---GACUCCAGGCGu -5'
29128 5' -60.1 NC_006146.1 + 157803 0.7 0.518347
Target:  5'- cGGACCCcGCCUggCgaccCUGGGGUCUGUc -3'
miRNA:   3'- -CCUGGGaCGGGa-Ga---GACUCCAGGCGu -5'
29128 5' -60.1 NC_006146.1 + 154725 0.7 0.518347
Target:  5'- cGGACCCcGCCUggCgaccCUGGGGUCUGUc -3'
miRNA:   3'- -CCUGGGaCGGGa-Ga---GACUCCAGGCGu -5'
29128 5' -60.1 NC_006146.1 + 151648 0.7 0.518347
Target:  5'- cGGACCCcGCCUggCgaccCUGGGGUCUGUc -3'
miRNA:   3'- -CCUGGGaCGGGa-Ga---GACUCCAGGCGu -5'
29128 5' -60.1 NC_006146.1 + 145492 0.7 0.518347
Target:  5'- cGGACCCcGCCUggCgaccCUGGGGUCUGUc -3'
miRNA:   3'- -CCUGGGaCGGGa-Ga---GACUCCAGGCGu -5'
29128 5' -60.1 NC_006146.1 + 142414 0.7 0.518347
Target:  5'- cGGACCCcGCCUggCgaccCUGGGGUCUGUc -3'
miRNA:   3'- -CCUGGGaCGGGa-Ga---GACUCCAGGCGu -5'
29128 5' -60.1 NC_006146.1 + 51997 0.72 0.402665
Target:  5'- uGGACgccaaCCUGCUCUCgaacCUGAGGcagUCCGCGg -3'
miRNA:   3'- -CCUG-----GGACGGGAGa---GACUCC---AGGCGU- -5'
29128 5' -60.1 NC_006146.1 + 151930 0.77 0.205664
Target:  5'- cGGCCCUgccGCCCUCUCUaGGGG-CCGCu -3'
miRNA:   3'- cCUGGGA---CGGGAGAGA-CUCCaGGCGu -5'
29128 5' -60.1 NC_006146.1 + 149495 1.09 0.001292
Target:  5'- gGGACCCUGCCCUCUCUGAGGUCCGCAu -3'
miRNA:   3'- -CCUGGGACGGGAGAGACUCCAGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.