Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29129 | 3' | -59 | NC_006146.1 | + | 88489 | 0.68 | 0.663873 |
Target: 5'- aUGUAuGGAgccaaugGGGCCuGGGGCUGUaUCUCc -3' miRNA: 3'- cACAU-CCU-------CCCGGuCCUCGACA-GGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 148076 | 0.68 | 0.654808 |
Target: 5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3' miRNA: 3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 157310 | 0.68 | 0.654808 |
Target: 5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3' miRNA: 3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 154232 | 0.68 | 0.654808 |
Target: 5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3' miRNA: 3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 151154 | 0.68 | 0.654808 |
Target: 5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3' miRNA: 3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 141920 | 0.68 | 0.654808 |
Target: 5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3' miRNA: 3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 144998 | 0.68 | 0.654808 |
Target: 5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3' miRNA: 3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 107625 | 0.68 | 0.654808 |
Target: 5'- ----cGGAGGuGCCAGG-GCUGUCaUCu -3' miRNA: 3'- cacauCCUCC-CGGUCCuCGACAGgAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 41597 | 0.68 | 0.644719 |
Target: 5'- -aGgcGGAGaGGCCcgGGGGGCUgGUCCg- -3' miRNA: 3'- caCauCCUC-CCGG--UCCUCGA-CAGGag -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 27899 | 0.68 | 0.644719 |
Target: 5'- ----cGGAGGGgaCCGGGAGCUGcUCC-Ca -3' miRNA: 3'- cacauCCUCCC--GGUCCUCGAC-AGGaG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 88852 | 0.69 | 0.594282 |
Target: 5'- -gGUAGGgaaucggcGGGGCCuGGGGCUGUUgUg -3' miRNA: 3'- caCAUCC--------UCCCGGuCCUCGACAGgAg -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 49716 | 0.69 | 0.594282 |
Target: 5'- uUGcAGucGGGCCAGGAGCUGguugauUUCUCg -3' miRNA: 3'- cACaUCcuCCCGGUCCUCGAC------AGGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 123692 | 0.7 | 0.564285 |
Target: 5'- cGUGgcGGAGgcGGCCAGGGGcCUGgCgCUCg -3' miRNA: 3'- -CACauCCUC--CCGGUCCUC-GACaG-GAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 51676 | 0.7 | 0.553382 |
Target: 5'- cUGaAGGGGGGCgacggggCGGGGGCUgaucGUCCUCc -3' miRNA: 3'- cACaUCCUCCCG-------GUCCUCGA----CAGGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 41304 | 0.7 | 0.544507 |
Target: 5'- gGUGaGGGgcaGGGGCUuuuucagaGGGAGCUGUCCcuUCa -3' miRNA: 3'- -CACaUCC---UCCCGG--------UCCUCGACAGG--AG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 74430 | 0.7 | 0.544507 |
Target: 5'- ---cAGGuGGGCCAGGA--UGUCCUUg -3' miRNA: 3'- cacaUCCuCCCGGUCCUcgACAGGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 119964 | 0.7 | 0.544507 |
Target: 5'- -gGUGGG-GGGUCAGGAGacg-CCUCg -3' miRNA: 3'- caCAUCCuCCCGGUCCUCgacaGGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 50057 | 0.71 | 0.505685 |
Target: 5'- --uUAGcAGGGCCAGGaAGCggacGUCCUCu -3' miRNA: 3'- cacAUCcUCCCGGUCC-UCGa---CAGGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 23131 | 0.72 | 0.458925 |
Target: 5'- --cUGGGAGaGGCCGGGAGcCUGggCUUCg -3' miRNA: 3'- cacAUCCUC-CCGGUCCUC-GACa-GGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 49787 | 0.74 | 0.341757 |
Target: 5'- uGUGUcucAGGAGGGgCAGGAagaugggugGCUGUCgUCg -3' miRNA: 3'- -CACA---UCCUCCCgGUCCU---------CGACAGgAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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