miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29129 5' -57.4 NC_006146.1 + 162648 0.66 0.871651
Target:  5'- cGGGGGUgcaUGCCC-CCUCGUAGgCAg- -3'
miRNA:   3'- cUCUCCA---GCGGGuGGAGCGUCaGUau -5'
29129 5' -57.4 NC_006146.1 + 93280 0.66 0.871651
Target:  5'- -cGGGGUUGCCCucGCCg-GUGGUCAUc -3'
miRNA:   3'- cuCUCCAGCGGG--UGGagCGUCAGUAu -5'
29129 5' -57.4 NC_006146.1 + 40862 0.66 0.871651
Target:  5'- ---uGGagGCCCGgCUCGCGGUCcgGa -3'
miRNA:   3'- cucuCCagCGGGUgGAGCGUCAGuaU- -5'
29129 5' -57.4 NC_006146.1 + 59972 0.66 0.864249
Target:  5'- uGAGAaGUCaGCCgACCUgGgGGUCAUGg -3'
miRNA:   3'- -CUCUcCAG-CGGgUGGAgCgUCAGUAU- -5'
29129 5' -57.4 NC_006146.1 + 39070 0.66 0.840823
Target:  5'- ---uGGUCGCCgGCCUC-CGGUCu-- -3'
miRNA:   3'- cucuCCAGCGGgUGGAGcGUCAGuau -5'
29129 5' -57.4 NC_006146.1 + 70729 0.66 0.83263
Target:  5'- cGGGGGGcuuaUUGCCCcCCUCGCGGaCGc- -3'
miRNA:   3'- -CUCUCC----AGCGGGuGGAGCGUCaGUau -5'
29129 5' -57.4 NC_006146.1 + 129481 0.67 0.824256
Target:  5'- aGGAGaGcCGCCCACCcagCGCGGcCGUc -3'
miRNA:   3'- cUCUC-CaGCGGGUGGa--GCGUCaGUAu -5'
29129 5' -57.4 NC_006146.1 + 160611 0.67 0.779952
Target:  5'- -cGAGGUCGgCCGCCUgGCAuGcCAg- -3'
miRNA:   3'- cuCUCCAGCgGGUGGAgCGU-CaGUau -5'
29129 5' -57.4 NC_006146.1 + 43659 0.68 0.761251
Target:  5'- gGAGAGGg-GCCCGgCUCGCAuUCGc- -3'
miRNA:   3'- -CUCUCCagCGGGUgGAGCGUcAGUau -5'
29129 5' -57.4 NC_006146.1 + 109660 0.68 0.732372
Target:  5'- aAGAGGgucugacaGCagaCCACCUCGCAGUCcgGu -3'
miRNA:   3'- cUCUCCag------CG---GGUGGAGCGUCAGuaU- -5'
29129 5' -57.4 NC_006146.1 + 6652 0.69 0.692704
Target:  5'- aGGGAGGUgGCCCACCagGCcccacugauGGUgGUAa -3'
miRNA:   3'- -CUCUCCAgCGGGUGGagCG---------UCAgUAU- -5'
29129 5' -57.4 NC_006146.1 + 151343 1.06 0.003144
Target:  5'- cGAGAGGUCGCCCACCUCGCAGUCAUAc -3'
miRNA:   3'- -CUCUCCAGCGGGUGGAGCGUCAGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.